Params: release/cmzasha --no-stderr --filter 500 25 /home/kasiaw/Rfam_7.0/CM/RF00009.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00009_RNaseP_nuc/RF00009_at25.filterspec Build: release Host: node015 pid: 1599 ---time: Mon Jul 4 05:26:56 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00009_Ecoli_expanded.hmm 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00009_Ecoli_expanded.hmm 1/remember-nuc,99,r-ACGU-_,98,l-ACGU-_,147,l-AGU-C-_,146,r-CGU-A_,161,l-AG-CU-_,160,l-ACU-G_,267,l-ACGU-_,266,r-ACGU-_,265,l-ACG-U_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00009_Ecoli_expanded.hmm 1/sub,145,30/sub,157,42 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00009.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 25 /home/kasiaw/Rfam_7.0/CM/RF00009.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node018 pid: 22686 ;Params: release/cmzasha --create-rigorous-filter 500 25 /home/kasiaw/Rfam_7.0/CM/RF00009.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node018 pid: 22686 ----2struct-info: only-hmm Exploded HMM has 1833 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00009.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 25 /home/kasiaw/Rfam_7.0/CM/RF00009.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node018 pid: 22686 ;Params: release/cmzasha --create-rigorous-filter 500 25 /home/kasiaw/Rfam_7.0/CM/RF00009.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node018 pid: 22686 ----2struct-info: 1/remember-nuc,99,r-ACGU-_/remember-nuc,98,l-ACGU-_/remember-nuc,147,l-AGU-C-_/remember-nuc,146,r-CGU-A_/remember-nuc,161,l-AG-CU-_/remember-nuc,160,l-ACU-G_/remember-nuc,267,l-ACGU-_/remember-nuc,266,r-ACGU-_/remember-nuc,265,l-ACG-U_ ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00009.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 25 /home/kasiaw/Rfam_7.0/CM/RF00009.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node018 pid: 22686 ;Params: release/cmzasha --create-rigorous-filter 500 25 /home/kasiaw/Rfam_7.0/CM/RF00009.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node018 pid: 22686 ----2struct-info: 1/sub,145,30/sub,157,42 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00009.cm (global) ----CM-scanning-logic: Infernal-0.55 Found 0 hits. done 2.08166e+08 nucs (frac lets thru so far=3.17966924e-05, 2d-fracLetsThru=1.62971e-05). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.00276056203, 2d-fracLetsThru=0.00144127). Filter report: done 574656 nucs (frac lets thru so far=0.190787184, 2d-fracLetsThru=0.190027). Filter report: done 109637 nucs (frac lets thru so far=0.0603719547, 2d-fracLetsThru=0.0595044). FULL: done 2.08166e+08 nucs (frac lets thru so far=3.17966924e-05, 2d-fracLetsThru=1.62971e-05). CPU time: 17576.75u 4.39s 04:53:01.13 Elapsed: 04:53:53 DONEdoneDONEdone