Params: release/cmzasha --no-stderr --filter 100 6 /home/kasiaw/Rfam_7.0/CM/RF00133.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00133_snoZ195/RF00133_at6.filterspec Build: release Host: node021 pid: 1792 ---time: Mon Jul 4 10:16:36 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00133_Saureus_compact.hmm hmm /home/kasiaw/Rfam_7.0_filters/RF00133_Saureus_expanded.hmm ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00133.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 6 /home/kasiaw/Rfam_7.0/CM/RF00133.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs011 pid: 11813 ;Params: release/cmzasha --create-rigorous-filter 100 6 /home/kasiaw/Rfam_7.0/CM/RF00133.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs011 pid: 11813 ----2struct-info: only-hmm ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00133.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 6 /home/kasiaw/Rfam_7.0/CM/RF00133.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs011 pid: 11813 ;Params: release/cmzasha --create-rigorous-filter 100 6 /home/kasiaw/Rfam_7.0/CM/RF00133.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs011 pid: 11813 ----2struct-info: only-hmm ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00133.cm (global) ----CM-scanning-logic: Infernal-0.55 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #686,emb|8254654| 510086 bp 17 contigs ----isReversed: 0 ----hitSequence: AUAAUAAUUAAUAUUAGUAAAACCAUACAAAAUUAAUGAAAUUGUUAAGAUAUCAUUAAAUUCUUUUCAAUAACCAUAUGAGGAUCU ----ssRNAplot: ((((((..............................(((((.......................)))))............)))))) ----hitGC: 0.183908 ----pairStats: 11,0,1,3 hit 0 : 428980 429066 (fwd) 6.83 bits <<<<<<------------------------------<<<<<___________________ 1 gggagaAGUGAUGAUAUUuUAUCCAUACCACAUUUCugcaucUcauAUGAUGAUCAaUcU 60 ::: : A U AU UA U++A CCAUAC A AUU UG:A +U UA GAU AUCA+U+ 428980 AUAAUAAUUAAUAUUAGUAAAACCAUACAAAAUUAAUGAAAUUGUUAAGAU-AUCAUUA- 429037 _____.>>>>>---.-------->>>>>> 61 ACaUC.augcaCUA.CCAUCUGAucuccc 87 A +UC U:CA UA CCAU UGA : ::: 429038 AAUUCuUUUCAAUAaCCAUAUGAGGAUCU 429066 ----endhit Found 1 hits. done 2.08166e+08 nucs (frac lets thru so far=1.79904235e-05, 2d-fracLetsThru=9.19993e-06). Filter report: done 2.08166e+08 nucs (frac lets thru so far=3.91081542e-05, 2d-fracLetsThru=2.01019e-05). Filter report: done 8141 nucs (frac lets thru so far=0.460017197, 2d-fracLetsThru=0.457665). FULL: done 2.08166e+08 nucs (frac lets thru so far=1.79904235e-05, 2d-fracLetsThru=9.19993e-06). CPU time: 4133.94u 1.15s 01:08:55.08 Elapsed: 01:08:55 DONEdoneDONEdone