Params: release/cmzasha --no-stderr --filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00005_tRNA/RF00005_at25.filterspec Build: release Host: node005 pid: 1939 ---time: Mon Jul 4 05:26:56 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00005_Saureus_expanded.hmm 1/remember-nuc,17,l-ACG-U_,16,l-AG_-C-U,33,r-AG_-CU,31,r-AG_-CU,30,l-AG_-CU,52,l-ACU-G-_,51,l-CU_-A-G 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00005_Saureus_expanded.hmm 1/remember-nuc,17,l-A_-CG-U,16,l-AG_-C-U,15,l-ACU-G_,33,r-AG_-CU,32,r-AG_-CU,31,r-AG_-CU,30,l-AG_-CU,52,l-ACU-G-_,51,l-CGU-A_,50,r-AG_-CU,49,l-AG_-CU 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00005_Saureus_expanded.hmm 1/sub,29,50/sub,49,56 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00005_Saureus_expanded.hmm 1/sub,29,50/sub,48,63 Exploded HMM has 1171 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ;Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ----2struct-info: 1/remember-nuc,17,l-ACG-U_/remember-nuc,16,l-AG_-C-U/remember-nuc,33,r-AG_-CU/remember-nuc,31,r-AG_-CU/remember-nuc,30,l-AG_-CU/remember-nuc,52,l-ACU-G-_/remember-nuc,51,l-CU_-A-G Exploded HMM has 2698 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ;Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ----2struct-info: 1/remember-nuc,17,l-A_-CG-U/remember-nuc,16,l-AG_-C-U/remember-nuc,15,l-ACU-G_/remember-nuc,33,r-AG_-CU/remember-nuc,32,r-AG_-CU/remember-nuc,31,r-AG_-CU/remember-nuc,30,l-AG_-CU/remember-nuc,52,l-ACU-G-_/remember-nuc,51,l-CGU-A_/remember-nuc,50,r-AG_-CU/remember-nuc,49,l-AG_-CU ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ;Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ----2struct-info: 1/sub,29,50/sub,49,56 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00005.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ;Params: release/cmzasha --create-rigorous-filter 100 25 /home/kasiaw/Rfam_7.0/CM/RF00005.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: cs010 pid: 21947 ----2struct-info: 1/sub,29,50/sub,48,63 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00005.cm (global) ----CM-scanning-logic: Infernal-0.55 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #32,emb|8254034| 211760 bp 2 contigs ----isReversed: 0 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 0 : 4027 4097 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 4027 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 4085 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 4086 CCGGUCGGUGCA 4097 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #32,emb|8254034| 211760 bp 2 contigs ----isReversed: 0 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 1 : 4291 4361 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 4291 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 4349 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 4350 CCGGUCGGUGCA 4361 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #32,emb|8254034| 211760 bp 2 contigs ----isReversed: 0 ----hitSequence: GCCGGCAUAGCAAAGUGGUUAAUGCGUCUGCCUCGUAAGCAGAAGGUCGCCAGUUCGAUUCUGGCUGUCGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,1 hit 2 : 4983 5055 (fwd) 74.51 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::G ::UAGC::AGUGGU A::GC+UC:G:CU UAA:C:GAAGGUCGC::GUUCGA+U 4983 GCCGGCAUAGCAAAGUGGUuAAUGCGUCUGCCUCGUAAGCAGAAGGUCGCCAGUUCGAUU 5042 >>>>>))))))): 60 CCcgccaucccCA 72 C::GC:: C::C 5043 CUGGCUGUCGGCU 5055 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #67,emb|8254051| 162284 bp 4 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 3 : 53751 53680 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 108534 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 108592 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 108593 CCCAGUGGGACCU 108605 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #107,emb|8254062| 51224 bp 1 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUUGACUCGAAAUCAACUGGGUUUACCCGCACAGGUUCAAAUCCUGUAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.493827 ----pairStats: 21,0,1,1 hit 4 : 42037 42117 (fwd) 58.51 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G C:C 42037 GUCAGUUUGUCCGAGUGGUuAAGGAGGUUGACUCGAAAUCAACU-ggguuuacccG-CAC 42094 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUC+AAUCC:G::+::::C 42095 AGGUUCAAAUCCUGUAGCUGACG 42117 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #201,emb|8254095| 95299 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUCAGGUUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 5 : 78604 78525 (rev) 58.89 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 16696 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUCAGGUUCUAUU-ccgaaaggG-CGCG 16753 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 16754 AGUUCGAAUCUCGCCUUCAUCA 16775 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #255,emb|8254403| 526382 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 6 : 293989 293918 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 232394 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 232452 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 232453 CCCGGUCUCGGAG 232465 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #255,emb|8254403| 526382 bp 2 contigs ----isReversed: 1 ----hitSequence: GGGCUUGUGGUUUAGUGGUAGAAUGCCAGUUUCGGGUACUGGCGAUCCGGGUUCGAUUCCCGGCAAGCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,2,0 hit 7 : 238198 238128 (rev) 66.88 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG::UGU+::U:AGUGGUA:A::+:C:G:+U :C:G: G+ +:CGGGUUCGA+UC 288185 GGGCUUGUGGUUUAGUGGUAGAAUGCCAGUUUCGGGUACUGGCGA-UCCGGGUUCGAUUC 288243 >>>>))))))): 61 CcgccaucccCA 72 CCG:CA::CCC 288244 CCGGCAAGCCCU 288255 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #264,emb|8254406| 840097 bp 4 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 8 : 449786 449715 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 390312 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 390370 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 390371 CCCGGUCUCGGAG 390383 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #264,emb|8254406| 840097 bp 4 contigs ----isReversed: 1 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 9 : 237992 237919 (rev) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 602106 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 602165 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 602166 CCCCUCCGCAGGCA 602179 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #264,emb|8254406| 840097 bp 4 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 10 : 36464 36392 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 803634 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 803693 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 803694 CCCUCGGUGGGUG 803706 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #268,emb|8254407| 49038 bp 1 contigs ----isReversed: 1 ----hitSequence: GCUCAGGUAGCUCAAUGGUUAGAGCAACGGUCUUAUCAACCGGAGGUUGUGGGUUCGAGUCCCAUCCUGUGUA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,2,2 hit 11 : 24343 24271 (rev) 61.28 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :: :A:GUAGCUCA+UGGU AGAGCA CGG:CUU+U A:CCG AGGU+::GGGUUCGA U 24696 GCUCAGGUAGCUCAAUGGUuAGAGCAACGGUCUUAUCAACCGGAGGUUGUGGGUUCGAGU 24755 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::C:U: ::A 24756 CCCAUCCUGUGUA 24768 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #268,emb|8254407| 49038 bp 1 contigs ----isReversed: 1 ----hitSequence: GCUCAGGUAGCUCAACGGUUAGAGCAACGGUCUUAUCAACCGGAGGUUGUGGGUUCAAGUCCCAUCCUGUGUA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,2,2 hit 12 : 24060 23988 (rev) 59.40 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :: :A:GUAGCUCA+ GGU AGAGCA CGG:CUU+U A:CCG AGGU+::GGGUUC+A U 24979 GCUCAGGUAGCUCAACGGUuAGAGCAACGGUCUUAUCAACCGGAGGUUGUGGGUUCAAGU 25038 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::C:U: ::A 25039 CCCAUCCUGUGUA 25051 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #329,emb|8254420| 312865 bp 2 contigs ----isReversed: 0 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 13 : 23052 23123 (fwd) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 23052 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 23111 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 23112 CUCUCUCUGCUA 23123 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #329,emb|8254420| 312865 bp 2 contigs ----isReversed: 0 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 14 : 186060 186131 (fwd) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 186060 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 186119 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 186120 CUCUCUCUGCUA 186131 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #333,emb|8254422| 319250 bp 1 contigs ----isReversed: 0 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 15 : 6208 6279 (fwd) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 6208 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 6267 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 6268 CUCUCUCUGCUA 6279 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #335,emb|8254423| 91433 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCUGUAUAGCACAGUGGUUAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAUCCGGCUACAGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,0,0 hit 16 : 88063 87991 (rev) 78.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:UAGC:CAGUGGU AG:GCAUC:G:CUU UAA:C:GAAGG CGC:GGUUCGAAU 3371 GCCUGUAUAGCACAGUGGUuAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAU 3430 >>>>>))))))): 60 CCcgccaucccCA 72 CC:GC:A::::C 3431 CCGGCUACAGGCU 3443 ----endhit ----hitSequence: GCCUGUAUAGCACAGUGGUUAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAUCCGGCUACAGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,0,0 hit 17 : 88318 88246 (rev) 78.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:UAGC:CAGUGGU AG:GCAUC:G:CUU UAA:C:GAAGG CGC:GGUUCGAAU 3116 GCCUGUAUAGCACAGUGGUuAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAU 3175 >>>>>))))))): 60 CCcgccaucccCA 72 CC:GC:A::::C 3176 CCGGCUACAGGCU 3188 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #335,emb|8254423| 91433 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCUGUAUAGCACAGUGGUUAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAUCCGGCUACAGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,0,0 hit 18 : 87472 87400 (rev) 78.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:UAGC:CAGUGGU AG:GCAUC:G:CUU UAA:C:GAAGG CGC:GGUUCGAAU 3962 GCCUGUAUAGCACAGUGGUuAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAU 4021 >>>>>))))))): 60 CCcgccaucccCA 72 CC:GC:A::::C 4022 CCGGCUACAGGCU 4034 ----endhit ----hitSequence: GCCUGUAUAGCACAGUGGUUAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAUCCGGCUACAGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,0,0 hit 19 : 87752 87680 (rev) 78.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:UAGC:CAGUGGU AG:GCAUC:G:CUU UAA:C:GAAGG CGC:GGUUCGAAU 3682 GCCUGUAUAGCACAGUGGUuAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAU 3741 >>>>>))))))): 60 CCcgccaucccCA 72 CC:GC:A::::C 3742 CCGGCUACAGGCU 3754 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #335,emb|8254423| 91433 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCUGUAUAGCACAGUGGUUAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAUCCGGCUACAGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,0,0 hit 20 : 86008 85936 (rev) 78.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:UAGC:CAGUGGU AG:GCAUC:G:CUU UAA:C:GAAGG CGC:GGUUCGAAU 5426 GCCUGUAUAGCACAGUGGUuAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAU 5485 >>>>>))))))): 60 CCcgccaucccCA 72 CC:GC:A::::C 5486 CCGGCUACAGGCU 5498 ----endhit ----hitSequence: GCCUGUAUAGCACAGUGGUUAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAUCCGGCUACAGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,0,0 hit 21 : 86263 86191 (rev) 78.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:UAGC:CAGUGGU AG:GCAUC:G:CUU UAA:C:GAAGG CGC:GGUUCGAAU 5171 GCCUGUAUAGCACAGUGGUuAGUGCAUCUGCCUUGUAAGCAGAAGGCCGCCGGUUCGAAU 5230 >>>>>))))))): 60 CCcgccaucccCA 72 CC:GC:A::::C 5231 CCGGCUACAGGCU 5243 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #351,emb|8254428| 470161 bp 2 contigs ----isReversed: 0 ----hitSequence: AAAUAAAUAAAUAAAUUGUUAAUUUUAAAUUUUAUAUUUUUAUUAUAAUAAGAAUUAUUUUUAUUUU ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....((((.....))))))))))). ----hitGC: 0.0298507 ----pairStats: 21,1,0,2 hit 22 : 413460 413526 (fwd) 25.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 ::::A::UA::U:A+U GU :A:: U::: +UU+UA :::A+ + +:::: GAAU 413460 AAAUAAAUAAAUAAAUUGUUAAUUUUAAAUUUUAUAUUUUUAUUA-UAAUA---AGAAU- 413514 >>>>))))))): 61 CcgccaucccCA 72 ::::::U:::: 413515 UAUUUUUAUUUU 413526 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #357,emb|8254284| 255706 bp 5 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 23 : 137882 137955 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 137882 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 137941 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 137942 CCCUACAUCGAGCG 137955 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #371,emb|8254431| 715652 bp 1 contigs ----isReversed: 1 ----hitSequence: UCCAGGAUGGUGCAGUGGAAAGCAUAGCAGCCUUUCAAGCUGCAGACCUGGGUUCAAUUCCCAGUCUUGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 24 : 715579 715508 (rev) 65.83 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: ::U+:::CAGUGG AG:::A:C:G:CUUU AA:C:G:AG+ C::GGGUUC+A+U 74 UCCAGGAUGGUGCAGUGGAaAGCAUAGCAGCCUUUCAAGCUGCAGA-CCUGGGUUCAAUU 132 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::: :::: 133 CCCAGUCUUGGAG 145 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #371,emb|8254431| 715652 bp 1 contigs ----isReversed: 1 ----hitSequence: ACCAGGAUGGUGUAGAGGAAAGCAUAGCAGCCGUCCAGCUGCAGACCUGGGUUCAAUUCCCAGUCUUGGAA ----ssRNAplot: (((((((..((((........)))).(((((......)))))....(((((.......)))))))))))). ----hitGC: 0.535211 ----pairStats: 21,0,3,1 hit 25 : 714428 714358 (rev) 35.14 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 ::: ::U+::::AG GG A::::A:C:G:C +U A:C:G:AG+ C::GGGUUC+A+U 1225 ACCAGGAUGGUGUAGAGGAaAGCAUAGCAGCC-GUCCAGCUGCAGA-CCUGGGUUCAAUU 1282 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::: ::: A 1283 CCCAGUCUUGGAA 1295 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #371,emb|8254431| 715652 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCCCAUUGGUCCAAUGGUAGGGCAUGAGAUUCCGGCUCUCGAGGUCGGGGUUCGAUUCCCCGGUGGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.605634 ----pairStats: 21,0,4,0 hit 26 : 110794 110724 (rev) 50.50 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :::: U+G::CA+UGGUAG::CA ::GA+U UC:: AGG +::GGGUUCGA+UC 604859 AGCCCAUUGGUCCAAUGGUAGGGCAUGAGAUUCCGGCUCUCGAGG-UCGGGGUUCGAUUC 604917 >>>>))))))): 61 CcgccaucccCA 72 CC:: :::: : 604918 CCCGGUGGGUUG 604929 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #371,emb|8254431| 715652 bp 1 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 27 : 53897 53826 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 661756 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 661814 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 661815 CCCAGUGGGACCU 661827 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #375,emb|8254433| 111488 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 28 : 22322 22250 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 89167 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 89226 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 89227 CCCACGGCGGGCU 89239 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #375,emb|8254433| 111488 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 29 : 7559 7487 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 103930 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 103989 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 103990 CCCACGGCGGGCU 104002 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #375,emb|8254433| 111488 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 30 : 3621 3549 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 107868 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 107927 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 107928 CCCACGGCGGGCU 107940 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #381,emb|8254435| 356818 bp 1 contigs ----isReversed: 0 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 31 : 180249 180328 (fwd) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 180249 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 180306 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 180307 AGUUCGAAUCUCGCCUUCAUCA 180328 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #381,emb|8254435| 356818 bp 1 contigs ----isReversed: 0 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 32 : 189322 189401 (fwd) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 189322 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 189379 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 189380 AGUUCGAAUCUCGCCUUCAUCA 189401 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #381,emb|8254435| 356818 bp 1 contigs ----isReversed: 0 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 33 : 189499 189578 (fwd) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 189499 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 189556 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 189557 AGUUCGAAUCUCGCCUUCAUCA 189578 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #381,emb|8254435| 356818 bp 1 contigs ----isReversed: 0 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 34 : 189760 189839 (fwd) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 189760 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 189817 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 189818 AGUUCGAAUCUCGCCUUCAUCA 189839 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #384,emb|8254436| 177920 bp 1 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 35 : 125940 126012 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 125940 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 125999 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 126000 CCCACGGCGGGCU 126012 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #388,emb|8254437| 547543 bp 2 contigs ----isReversed: 1 ----hitSequence: UAGAGCGUGGUGCAGUGGAAGCAUACCGGAACGUGUAUUCGGUGGUCAUGGGAUCGAAACCCAUCGCUUUAA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.513889 ----pairStats: 21,0,3,0 hit 36 : 412059 411988 (rev) 43.63 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :: :::GU+:::CAGUGG AG:::A:CG A +U AU CG:+GGUC::GGG UCGAA C 135485 UAGAGCGUGGUGCAGUGGAAGCAUACCGGAACGUGUAUUCGGUGGUCAUGGGAUCGAAAC 135544 >>>>))))))): 61 CcgccaucccCA 72 CC::C::: ::A 135545 CCAUCGCUUUAA 135556 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #388,emb|8254437| 547543 bp 2 contigs ----isReversed: 1 ----hitSequence: UAAAGCGUGGUGCAGUGGAAGCAUACCGGAACGUGUAUUCGGUGGUCAUGGGAUCGAAACCCAUCGCUUUAA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.5 ----pairStats: 21,0,2,0 hit 37 : 411764 411693 (rev) 45.85 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 ::::::GU+:::CAGUGG AG:::A:CG A +U AU CG:+GGUC::GGG UCGAA C 135780 UAAAGCGUGGUGCAGUGGAAGCAUACCGGAACGUGUAUUCGGUGGUCAUGGGAUCGAAAC 135839 >>>>))))))): 61 CcgccaucccCA 72 CC::C::::::A 135840 CCAUCGCUUUAA 135851 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #398,emb|8255097| 1509 bp 1 contigs ----isReversed: 1 ----hitSequence: ACUUAUGUGGCGGAAUAGGUAGACGCGUGGGACUUAAAAUCUCAUUCCUACGGAGUGCCGGUUCGACCCCGGUCAUAAGUA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))............(((((.......)))))))))))). ----hitGC: 0.506173 ----pairStats: 21,0,2,1 hit 38 : 1311 1231 (rev) 52.78 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,.........,,,<< 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG.........gUcgc 49 ::::AUGU+GC::A+U GGU ::GC+U: GACUU++AAUC :A+ G +:C 199 ACUUAUGUGGCGGAAUaGGUaGACGCGUGGGACUUAAAAUCUCAU-uccuacggaG-UGC 256 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGA CC:G:CAU::::A 257 CGGUUCGACCCCGGUCAUAAGUA 279 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #417,emb|8254444| 399810 bp 1 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 39 : 248843 248761 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 150968 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 151025 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 151026 GUGAGUUCGAAUCUCACAGUUGCCA 151050 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #417,emb|8254444| 399810 bp 1 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 40 : 123827 123754 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 275984 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 276043 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 276044 CCCUACAUCGAGCG 276057 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 41 : 385181 385262 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 385181 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 385238 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 385239 UGAGUUCAAUUCUCACAGGUGUCG 385262 ----endhit ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 42 : 384927 385008 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 384927 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 384984 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 384985 UGAGUUCAAUUCUCACAGGUGUCG 385008 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 43 : 385458 385539 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 385458 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 385515 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 385516 UGAGUUCAAUUCUCACAGGUGUCG 385539 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 44 : 385779 385860 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 385779 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 385836 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 385837 UGAGUUCAAUUCUCACAGGUGUCG 385860 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 45 : 386263 386344 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 386263 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 386320 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 386321 UGAGUUCAAUUCUCACAGGUGUCG 386344 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 46 : 386594 386675 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 386594 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 386651 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 386652 UGAGUUCAAUUCUCACAGGUGUCG 386675 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 47 : 474607 474687 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 474607 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 474664 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 474665 AGGUUCGAAUCCUGCAGUUGUCG 474687 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 1 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 48 : 350057 349976 (rev) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 165676 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 165733 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 165734 UGAGUUCAAUUCUCACAGGUGUCG 165757 ----endhit ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 49 : 350225 350144 (rev) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 165508 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 165565 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 165566 UGAGUUCAAUUCUCACAGGUGUCG 165589 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #421,emb|8254446| 515732 bp 2 contigs ----isReversed: 1 ----hitSequence: GGCCUUGUGGCGCAAUGGUAGCGCAGUGGAUUUCGGCUCCAAAGGUUUAGGGUUCGAGUCCCUACGGGGUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.597222 ----pairStats: 21,0,3,1 hit 50 : 348057 347986 (rev) 63.58 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G :: +GU+GC:CA+UGGUAG:GCA :GGA+UU UCC: AGGU+::GGGUUCGA UC 167676 GGCCUUGUGGCGCAAUGGUAGCGCAGUGGAUUUCGGCUCCAAAGGUUUAGGGUUCGAGUC 167735 >>>>))))))): 61 CcgccaucccCA 72 CC::C+ :: C 167736 CCUACGGGGUCG 167747 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #424,emb|8254448| 189492 bp 1 contigs ----isReversed: 0 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 51 : 71046 71116 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 71046 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 71104 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 71105 CCGGUCGGUGCA 71116 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #443,emb|8254457| 136848 bp 1 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGCGUAGUGGUUAGCAUGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUCCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,2,1 hit 52 : 136003 135931 (rev) 61.43 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UA: ::AGUGGU A:: :+UC:G:CUU+ A :C:GAAGGUC:CG:GUUC+A+ 846 GAUUCCUUAGCGUAGUGGUuAGCAUGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUC 905 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 906 CUCGGAGGAAUCA 918 ----endhit ----hitSequence: GAUUCCUUAGUGAAGUGGUUAUCACGUCAGUCUCACACACUGAAGGUCCCGAGUUCAAUCCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,0,0 hit 53 : 136194 136122 (rev) 69.73 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:: AGUGGU A ::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+A+ 655 GAUUCCUUAGUGAAGUGGUuAUCACGUCAGUCUCACACACUGAAGGUCCCGAGUUCAAUC 714 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 715 CUCGGAGGAAUCA 727 ----endhit ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUCCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 54 : 136393 136321 (rev) 71.07 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CUU+ A :C:GAAGGUC:CG:GUUC+A+ 456 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUC 515 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 516 CUCGGAGGAAUCA 528 ----endhit ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUCCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 55 : 136575 136503 (rev) 71.07 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CUU+ A :C:GAAGGUC:CG:GUUC+A+ 274 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUC 333 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 334 CUCGGAGGAAUCA 346 ----endhit ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 56 : 136817 136745 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 32 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 91 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 92 CUCGGAGGAAUCA 104 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #443,emb|8254457| 136848 bp 1 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 57 : 135774 135702 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 1075 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 1134 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 1135 CUCGGAGGAAUCA 1147 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #445,emb|8254459| 486561 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,2,0 hit 58 : 311081 311009 (rev) 69.95 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+::GGACU +AAUCC:: GGU+:CG:GUUCGA U 175481 GGAGACUUAGCUCAAGuGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGU 175540 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 175541 CACGUAGUCUUCA 175553 ----endhit ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,2,0 hit 59 : 311311 311239 (rev) 69.95 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+::GGACU +AAUCC:: GGU+:CG:GUUCGA U 175251 GGAGACUUAGCUCAAGuGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGU 175310 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 175311 CACGUAGUCUUCA 175323 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #445,emb|8254459| 486561 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,2,0 hit 60 : 310793 310721 (rev) 69.95 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+::GGACU +AAUCC:: GGU+:CG:GUUCGA U 175769 GGAGACUUAGCUCAAGuGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGU 175828 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 175829 CACGUAGUCUUCA 175841 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #445,emb|8254459| 486561 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,2,0 hit 61 : 310491 310419 (rev) 69.95 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+::GGACU +AAUCC:: GGU+:CG:GUUCGA U 176071 GGAGACUUAGCUCAAGuGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGU 176130 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 176131 CACGUAGUCUUCA 176143 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #445,emb|8254459| 486561 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,2,0 hit 62 : 310125 310053 (rev) 69.95 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+::GGACU +AAUCC:: GGU+:CG:GUUCGA U 176437 GGAGACUUAGCUCAAGuGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGU 176496 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 176497 CACGUAGUCUUCA 176509 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #445,emb|8254459| 486561 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,2,0 hit 63 : 309712 309640 (rev) 69.95 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+::GGACU +AAUCC:: GGU+:CG:GUUCGA U 176850 GGAGACUUAGCUCAAGuGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAGU 176909 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 176910 CACGUAGUCUUCA 176922 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 64 : 120276 120348 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 120276 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 120335 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 120336 CCCACGGCGGGCU 120348 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 65 : 120914 120986 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 120914 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 120972 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 120973 UCCCGGUGGGGGAA 120986 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 66 : 215326 215398 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 215326 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 215384 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 215385 UCCCGGUGGGGGAA 215398 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 67 : 215943 216015 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 215943 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 216001 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 216002 UCCCGGUGGGGGAA 216015 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 68 : 218664 218736 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 218664 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 218722 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 218723 UCCCGGUGGGGGAA 218736 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 69 : 276883 276963 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 276883 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 276940 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 276941 AGGUUCGAAUCCUGCAGUUGUCG 276963 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 70 : 370353 370436 (fwd) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 370353 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 370412 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 370413 CCGGUUCGAACCCGGGAGUUCGGA 370436 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 71 : 783997 784068 (fwd) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 783997 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 784056 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 784057 CUCUCUCUGCUA 784068 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 0 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 72 : 784286 784357 (fwd) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 784286 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 784345 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 784346 CUCUCUCUGCUA 784357 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 73 : 703090 703018 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 113453 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 113512 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 113513 CUCGGAGGAAUCA 113525 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 1 ----hitSequence: GGUUCUAUAGUAUAGCGGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUAGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 74 : 314188 314117 (rev) 66.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:UAG:::AG GGU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 502355 GGUUCUAUAGUAUAGCGGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 502413 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 502414 CCCAGUAGGACCU 502426 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #449,emb|8254600| 816542 bp 6 contigs ----isReversed: 1 ----hitSequence: GGUUCUAUAGUAUAGCGGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUAGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 75 : 313874 313803 (rev) 66.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:UAG:::AG GGU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 502669 GGUUCUAUAGUAUAGCGGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 502727 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 502728 CCCAGUAGGACCU 502740 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #455,emb|8254603| 126171 bp 3 contigs ----isReversed: 1 ----hitSequence: GUCGGCAUGGUGAAGUAGUAAUCACGAAGGUAUCACGAAGGUCUAAUAAACCUUAAUCCUAGGUUCAAACCCUAGUGUCGACU ----ssRNAplot: (((((((..((((...................)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.433735 ----pairStats: 21,0,1,0 hit 76 : 36666 36584 (rev) 39.10 bits (((((((,,<<<<______._...........>>>>,<<<<<_______>>>>>,,,,,< 1 GgggaugUAGCucAgUGGU.A...........gaGCaucgGaCUuuuAAuCcgaaGgUcg 48 G::G ::U+G:: AGU GU A ::C+::GG:CU +UAA:CC::A+ C: 89506 GUCGGCAUGGUGAAGUAGUaAucacgaagguaUCACGAAGGUCUAAUAAACCUUAAU-CC 89564 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 ::GGUUC+AA CC::::: C::C 89565 UAGGUUCAAACCCUAGUGUCGACU 89588 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #465,emb|8254606| 111380 bp 3 contigs ----isReversed: 0 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 77 : 15089 15160 (fwd) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 15089 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 15147 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 15148 CCCAGUACGACCU 15160 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #466,emb|8254460| 638469 bp 5 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 78 : 605074 605146 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 605074 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 605133 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 605134 CCCACGGCGGGCU 605146 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #466,emb|8254460| 638469 bp 5 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 79 : 579635 579563 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 58835 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 58893 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 58894 UCCCGGUGGGGGAA 58907 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #466,emb|8254460| 638469 bp 5 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 80 : 579012 578940 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 59458 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 59516 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 59517 UCCCGGUGGGGGAA 59530 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #470,emb|8254607| 557789 bp 5 contigs ----isReversed: 0 ----hitSequence: GCUCAGGUAGCUCAGUUGGUUAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGACCCCCACCUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.567568 ----pairStats: 21,0,2,0 hit 81 : 436554 436627 (fwd) 73.46 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A GUAGCUCAGU GGU AGAGC+U:GG CUU+U A CC:A GGUCG:GGGUUCGA 436554 GCUCAGGUAGCUCAGUuGGUuAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGAC 436613 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC U:::CA 436614 CCCCACCUUGAGCA 436627 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #470,emb|8254607| 557789 bp 5 contigs ----isReversed: 0 ----hitSequence: GCUCAGGUAGCUCAGUUGGUUAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGACCCCCACCUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.567568 ----pairStats: 21,0,2,0 hit 82 : 436905 436978 (fwd) 73.46 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A GUAGCUCAGU GGU AGAGC+U:GG CUU+U A CC:A GGUCG:GGGUUCGA 436905 GCUCAGGUAGCUCAGUuGGUuAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGAC 436964 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC U:::CA 436965 CCCCACCUUGAGCA 436978 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #470,emb|8254607| 557789 bp 5 contigs ----isReversed: 0 ----hitSequence: GCUCAGGUAGCUCAGUUGGUUAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGACCCCCACCUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.567568 ----pairStats: 21,0,2,0 hit 83 : 437192 437265 (fwd) 73.46 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A GUAGCUCAGU GGU AGAGC+U:GG CUU+U A CC:A GGUCG:GGGUUCGA 437192 GCUCAGGUAGCUCAGUuGGUuAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGAC 437251 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC U:::CA 437252 CCCCACCUUGAGCA 437265 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #470,emb|8254607| 557789 bp 5 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 84 : 493111 493039 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 64679 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 64738 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 64739 CCGAGUGAAGGCA 64751 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #478,emb|8254609| 555380 bp 1 contigs ----isReversed: 1 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 85 : 73068 72997 (rev) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 482313 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 482371 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 482372 CCCAGUACGACCU 482384 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #478,emb|8254609| 555380 bp 1 contigs ----isReversed: 1 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 86 : 70621 70550 (rev) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 484760 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 484818 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 484819 CCCAGUACGACCU 484831 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #478,emb|8254609| 555380 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 87 : 15708 15636 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 539673 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 539732 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 539733 CCGAGUGAAGGCA 539745 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #485,emb|8254465| 17739 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCGGCAUGGUGAAAUAGUAAUUACGACGGUAUCACGGAAUCCUCUAACUCUUCAAUUCUAGGUUCGAAUCCUAGUGUCGGCG ----ssRNAplot: (((((((..((((........)))).(((((........)))))..............(((((.......)))))))))))). ----hitGC: 0.46988 ----pairStats: 21,0,3,1 hit 88 : 9750 9668 (rev) 26.29 bits (((((((,,<<<<______._>>>>,<<<<<_____.__>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuu.AAuCcgaaG..........gUcg 48 G::G ::U+G: A+U GU A :C+: G : U + A: C : +U+: 7990 GCCGGCAUGGUGAAAUAGUaAUUACGACGGUAUCACgGAAUCCUC-uaacucuucaAUUC 8048 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 ::GGUUCGAAUCC::::: C::C 8049 UAGGUUCGAAUCCUAGUGUCGGCG 8072 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #485,emb|8254465| 17739 bp 1 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 89 : 7938 7866 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 9802 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 9861 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 9862 CCCUCGGUGGGUG 9874 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #485,emb|8254465| 17739 bp 1 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 90 : 7680 7608 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 10060 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 10119 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 10120 CCCUCGGUGGGUG 10132 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 91 : 31176 31104 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 95080 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 95139 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 95140 CCCCCCACAUCCA 95152 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 92 : 30886 30814 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 95370 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 95429 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 95430 CCCCCCACAUCCA 95442 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 93 : 30620 30548 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 95636 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 95695 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 95696 CCCCCCACAUCCA 95708 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCACACGGCAGAGUACUUGACUUGCACUCAAGAGGCAGGGGGAUCGAAGCCCUCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.575342 ----pairStats: 21,0,3,0 hit 94 : 30227 30155 (rev) 52.93 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUA:CUCA GG AGAG:A:::GACUU A UC:::AGG G GGG UCGAA 96029 GGGUGUGUAGCUCACAcGGCAGAGUACUUGACUUGCACUCAAGAGGCAGGGGGAUCGAAG 96088 >>>>>))))))): 60 CCcgccaucccCA 72 CCC CCA:: CCA 96089 CCCUCCACAUCCA 96101 ----endhit ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 95 : 30399 30327 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 95857 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 95916 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 95917 CCCCCCACAUCCA 95929 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 96 : 29971 29899 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 96285 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 96344 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 96345 CCCCCCACAUCCA 96357 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCAUAUGGUAGAGCGCUUGAUUCGCAUUCAGGAGGCAAGGGGAUCGAUGCCCCUCACAUCUA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 97 : 29572 29500 (rev) 52.02 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :G ::UGUAGCUCA GGUAGAGC+: :GA+U A UC: :AGG ::GGG UCGA+ 96684 GGGUGUGUAGCUCAUAuGGUAGAGCGCUUGAUUCGCAUUCAGGAGGCAAGGGGAUCGAUG 96743 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::CA:: C:A 96744 CCCCUCACAUCUA 96756 ----endhit ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 98 : 29749 29677 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 96507 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 96566 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 96567 CCCCCCACAUCCA 96579 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 99 : 29328 29256 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 96928 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 96987 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 96988 CCCCCCACAUCCA 97000 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #491,emb|8254468| 126255 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 100 : 28458 28386 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 97798 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 97857 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 97858 CCCCCCACAUCCA 97870 ----endhit ----hitSequence: GGGUGUGUAGCUCACAUGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUGCCCCCCACAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 101 : 28617 28545 (rev) 57.60 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG ::UGUAGCUCA GGUAGAGC+:::GA+UU A UC:::AGG G:GGG UCGA+ 97639 GGGUGUGUAGCUCACAuGGUAGAGCGCUUGAUUUGCAUUCAAGAGGCAGGGGGAUCGAUG 97698 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCA:: CCA 97699 CCCCCCACAUCCA 97711 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #492,emb|8254469| 111836 bp 1 contigs ----isReversed: 1 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 102 : 85849 85768 (rev) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 25988 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 26045 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 26046 UGAGUUCAAUUCUCACAGGUGUCG 26069 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 0 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 103 : 297973 298046 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 297973 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 298032 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 298033 CCCCUCCCGGAGCA 298046 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 104 : 297812 297885 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 297812 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 297871 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 297872 CCCCUCCCGGAGCA 297885 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 105 : 312558 312629 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 312558 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 312617 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 312618 CCACCUUGGUUG 312629 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 0 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 106 : 332149 332228 (fwd) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 332149 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 332206 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 332207 AGUUCGAAUCUCGCCUUCAUCA 332228 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 107 : 656528 656599 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 656528 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 656587 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 656588 CCACCUUGGUUG 656599 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 108 : 395426 395347 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 269650 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 269707 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 269708 AGUUCGAAUCUCGCCUUCAUCA 269729 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 109 : 257846 257763 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 407230 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 407289 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 407290 CCGGUUCGAACCCGGGAGUUCGGA 407313 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 110 : 257671 257588 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 407405 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 407464 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 407465 CCGGUUCGAACCCGGGAGUUCGGA 407488 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #496,emb|8254610| 665075 bp 6 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 111 : 122466 122395 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 542610 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 542668 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 542669 CCCAGUGGGACCU 542681 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #498,emb|8254611| 521720 bp 9 contigs ----isReversed: 0 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 112 : 101759 101832 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 101759 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 101818 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 101819 CCCCUCCGCAGGCA 101832 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #498,emb|8254611| 521720 bp 9 contigs ----isReversed: 1 ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCUGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.597222 ----pairStats: 21,0,4,0 hit 113 : 488453 488382 (rev) 65.73 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC: GUUC+A+ C 33268 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 33327 >>>>))))))): 61 CcgccaucccCA 72 :GC:+: CCC 33328 UGGCAGGUCCCU 33339 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #498,emb|8254611| 521720 bp 9 contigs ----isReversed: 1 ----hitSequence: AUCAAUUUAUUUAAAUUUUCAUAAAAUUUUAUUUUAAAUAAAAACUUUUAAAACAUUUUUAAUUUUAUUUUAAGUUGAUA ----ssRNAplot: (((((((..((((........)))).(((((.......)))))................(((.......)))))))))). ----hitGC: 0.075 ----pairStats: 21,2,1,0 hit 114 : 419006 418927 (rev) 26.48 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,............,,, 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG............gUc 47 ::::A+:UA::U A+U U A A::AU:::A+UUU+AAU:::AA U+ 102715 AUCAAUUUAUUUAAAUUUUcAUAAAAUUUUAUUUUAAAUAAAAA-cuuuuaaaacauUUU 102773 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 ::: UU A+U ::::+U::::A 102774 UAA--UUUUAUU--UUAAGUUGAUA 102794 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #504,emb|8253811| 495369 bp 4 contigs ----isReversed: 0 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 115 : 357099 357171 (fwd) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 357099 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 357158 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 357159 CCGAGUGAAGGCA 357171 ----endhit ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 116 : 356939 357011 (fwd) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 356939 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 356998 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 356999 CCGAGUGAAGGCA 357011 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #504,emb|8253811| 495369 bp 4 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 117 : 356455 356383 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 138915 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 138974 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 138975 CCGAGUGAAGGCA 138987 ----endhit ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 118 : 356606 356534 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 138764 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 138823 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 138824 CCGAGUGAAGGCA 138836 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #504,emb|8253811| 495369 bp 4 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 119 : 349252 349180 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 146118 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 146177 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 146178 CCGAGUGAAGGCA 146190 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #504,emb|8253811| 495369 bp 4 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 120 : 341704 341632 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 153666 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 153725 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 153726 CCGAGUGAAGGCA 153738 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 0 ----hitSequence: GGCUCAGUGGUGCAGCUGGUAAGCAUGCUCGAUUUAUAUUUGCUGACCAACCUUAUAAAAGUGUGUCGAGAGACAGAGGUUCGAACCCUCUCUGAGCUA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............................(((((.......)))))))))))). ----hitGC: 0.474747 ----pairStats: 21,0,3,2 hit 121 : 173088 173186 (fwd) 38.31 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,.............. 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG.............. 44 :G::::GU+:::CAG GGU AG:::+ : A+UU+UA U : 173088 GGCUCAGUGGUGCAGCuGGUaAGCAUGCUCGAUUUAUAUUUGCUG-accaaccuuauaaa 173146 .............,,,<<<<<_______>>>>>))))))): 45 .............gUcgcgGGUUCgAaUCCcgccaucccCA 72 + C:::GGUUCGAA CC:::C::::C:A 173147 agugugucgagagA-CAGAGGUUCGAACCCUCUCUGAGCUA 173186 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 0 ----hitSequence: GGCUCAGUGGUGCAGCUGGUAAGCAUACUCGAUUUAUUGAACCAUUGAAGAAAAGCUUUUCGAGAGACGGAGGUUCAAAUCCUCUCUGGGCUA ----ssRNAplot: (((((((..((((.........)))).(((((....)))))...........................(((((.......)))))))))))). ----hitGC: 0.462366 ----pairStats: 21,0,5,1 hit 122 : 178954 179046 (fwd) 32.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,.............. 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG.............. 44 :G: ::GU+:::CAG GGU AG:::A :: A+UU AU :: 178954 GGCUCAGUGGUGCAGCuGGUaAGCAUACUCGAUUU---AUUGAAC-cauugaagaaaagc 179009 ..........,,,<<<<<_______>>>>>))))))): 45 ..........gUcgcgGGUUCgAaUCCcgccaucccCA 72 + C:::GGUUC+AAUCC:::C:: :C:A 179010 uuuucgagagA-CGGAGGUUCAAAUCCUCUCUGGGCUA 179046 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 123 : 205348 205277 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 173756 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 173814 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 173815 CCCGGUCUCGGAG 173827 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 124 : 184408 184337 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 194696 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 194754 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 194755 CCCGGUCUCGGAG 194767 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 125 : 179266 179195 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 199838 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 199896 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 199897 CCCGGUCUCGGAG 199909 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 126 : 132172 132102 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 246932 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 246990 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 246991 CCGGUCGGUGCA 247002 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 127 : 131907 131837 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 247197 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 247255 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 247256 CCGGUCGGUGCA 247267 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 128 : 131666 131596 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 247438 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 247496 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 247497 CCGGUCGGUGCA 247508 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 129 : 54959 54889 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 324145 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 324203 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 324204 CCGGUCGGUGCA 324215 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 130 : 54639 54569 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 324465 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 324523 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 324524 CCGGUCGGUGCA 324535 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 131 : 54020 53950 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 325084 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 325142 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 325143 CCGGUCGGUGCA 325154 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 132 : 41946 41876 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 337158 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 337216 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 337217 CCGGUCGGUGCA 337228 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 133 : 40734 40664 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 338370 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 338428 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 338429 CCGGUCGGUGCA 338440 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #516,emb|8254470| 379103 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 134 : 28929 28859 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 350175 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 350233 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 350234 CCGGUCGGUGCA 350245 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #520,emb|8254617| 935000 bp 2 contigs ----isReversed: 1 ----hitSequence: AAUGUAUUGAACAAAUUAUUUUAGUUAUAAAAUUUAAUAUUUUAUUUCAACAAUUUUAAUUCAAAUUUAAAAUGCAUUU ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..........(((((.......)))))))))))). ----hitGC: 0.113924 ----pairStats: 21,0,1,1 hit 135 : 163516 163438 (rev) 27.02 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,.......,,,<<<< 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG.......gUcgcgG 51 :::G ::U+::::A+U U ::::AU:::A+UU++ AU:::A+ + +:::: 771485 AAUGUAUUGAACAAAUuAUUuUAGUUAUAAAAUUUAAUAUUUUAU-uucaacaA-UUUUA 771542 <_______>>>>>))))))): 52 GUUCgAaUCCcgccaucccCA 72 :UUC+AAU::::::: C::: 771543 AUUCAAAUUUAAAAUGCAUUU 771563 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #522,emb|8253815| 514547 bp 2 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 136 : 254189 254117 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 260359 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 260418 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 260419 CCCUCGGUGGGUG 260431 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #535,emb|8254475| 588109 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 137 : 520980 520908 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 67130 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 67189 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 67190 CCCAGGUUCUCCA 67202 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #535,emb|8254475| 588109 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 138 : 76021 75949 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 512089 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 512148 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 512149 CCGCCAAGUGGCU 512161 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 139 : 76250 76178 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 511860 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 511919 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 511920 CCGCCAAGUGGCU 511932 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #535,emb|8254475| 588109 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 140 : 75260 75188 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 512850 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 512909 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 512910 CCGCCAAGUGGCU 512922 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 141 : 75414 75342 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 512696 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 512755 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 512756 CCGCCAAGUGGCU 512768 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 142 : 75711 75639 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 512399 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 512458 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 512459 CCGCCAAGUGGCU 512471 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #538,emb|8254476| 274746 bp 2 contigs ----isReversed: 0 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 143 : 158577 158649 (fwd) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 158577 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 158636 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 158637 CCGAGUGAAGGCA 158649 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 144 : 67833 67762 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 5024 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 5083 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 5084 CUCUCUCUGCUA 5095 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 145 : 67636 67565 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 5221 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 5280 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 5281 CUCUCUCUGCUA 5292 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 146 : 67439 67368 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 5418 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 5477 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 5478 CUCUCUCUGCUA 5489 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 147 : 67244 67173 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 5613 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 5672 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 5673 CUCUCUCUGCUA 5684 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 148 : 67047 66976 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 5810 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 5869 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 5870 CUCUCUCUGCUA 5881 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUAGCGAAGUGGGAUCGCGUUGUGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,1 hit 149 : 66852 66781 (rev) 57.66 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :G::: GUAGC: AGU GG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA 6005 AGCAGGGUAGCGAAGUgGG-AUCGCGUUGUGCUCAUAACUCAAAGGUCGGAGGAUCGAAA 6063 >>>>>))))))): 60 CCcgccaucccCA 72 CC:::C :::C:A 6064 CCUCUCUCUGCUA 6076 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 150 : 66593 66522 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 6264 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 6323 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 6324 CUCUCUCUGCUA 6335 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #550,emb|8254622| 72856 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 151 : 66391 66320 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 6466 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 6525 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 6526 CUCUCUCUGCUA 6537 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #571,emb|8254481| 36977 bp 1 contigs ----isReversed: 0 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 152 : 954 1036 (fwd) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 954 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 1011 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 1012 GUGAGUUCGAAUCUCACAGUUGCCA 1036 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #579,emb|8254483| 230791 bp 1 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 153 : 54478 54558 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 54478 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 54535 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 54536 AGGUUCGAAUCCUGCAGUUGUCG 54558 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #579,emb|8254483| 230791 bp 1 contigs ----isReversed: 0 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 154 : 86560 86633 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 86560 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 86619 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 86620 CCCCUCCCGGAGCA 86633 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 155 : 86315 86388 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 86315 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 86374 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 86375 CCCCUCCCGGAGCA 86388 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #579,emb|8254483| 230791 bp 1 contigs ----isReversed: 0 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 156 : 86827 86900 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 86827 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 86886 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 86887 CCCCUCCCGGAGCA 86900 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #579,emb|8254483| 230791 bp 1 contigs ----isReversed: 0 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 157 : 87259 87332 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 87259 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 87318 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 87319 CCCCUCCCGGAGCA 87332 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #579,emb|8254483| 230791 bp 1 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 158 : 215250 215178 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 15542 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 15601 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 15602 CCCUCGGUGGGUG 15614 ----endhit ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 159 : 215462 215390 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 15330 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 15389 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 15390 CCCUCGGUGGGUG 15402 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #588,emb|8254486| 430721 bp 2 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 160 : 192730 192803 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 192730 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 192789 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 192790 CCCUACAUCGAGCG 192803 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #588,emb|8254486| 430721 bp 2 contigs ----isReversed: 0 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 161 : 322119 322198 (fwd) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 322119 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 322176 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 322177 AGUUCGAAUCUCGCCUUCAUCA 322198 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #590,emb|8254487| 513792 bp 3 contigs ----isReversed: 0 ----hitSequence: GUGGAUGUAGCUCAGUUGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAACCCACCAUCCNNN ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.493151 ----pairStats: 21,0,0,2 hit 162 : 247891 247963 (fwd) 60.17 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GGAUGUAGCUCAGU GG AGAGC+U::GA+U+U UC::AAGGUCG:GGG UCGAA 247891 GUGGAUGUAGCUCAGUuGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAA 247950 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC 247951 CCCACCAUCCNNN 247963 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #590,emb|8254487| 513792 bp 3 contigs ----isReversed: 1 ----hitSequence: GUGGAUAUAGCUCAGUUGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAACCCACUAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,0,0 hit 163 : 248157 248085 (rev) 71.13 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAU:UAGCUCAGU GG AGAGC+U::GA+U+U UC::AAGGUCG:GGG UCGAA 265636 GUGGAUAUAGCUCAGUuGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAA 265695 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:AUCC:CA 265696 CCCACUAUCCACA 265708 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #590,emb|8254487| 513792 bp 3 contigs ----isReversed: 1 ----hitSequence: GUGGAUAUAGCUCAGUUGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAACCCACUAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,0,0 hit 164 : 246596 246524 (rev) 71.13 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAU:UAGCUCAGU GG AGAGC+U::GA+U+U UC::AAGGUCG:GGG UCGAA 267197 GUGGAUAUAGCUCAGUuGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAA 267256 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:AUCC:CA 267257 CCCACUAUCCACA 267269 ----endhit ----hitSequence: GUGGAUAUAGCUCAGUUGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAACCCACUAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,0,0 hit 165 : 246832 246760 (rev) 71.13 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAU:UAGCUCAGU GG AGAGC+U::GA+U+U UC::AAGGUCG:GGG UCGAA 266961 GUGGAUAUAGCUCAGUuGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAA 267020 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:AUCC:CA 267021 CCCACUAUCCACA 267033 ----endhit ----hitSequence: GUGGAUAUAGCUCAGUUGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAACCCACUAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,0,0 hit 166 : 247055 246983 (rev) 71.13 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAU:UAGCUCAGU GG AGAGC+U::GA+U+U UC::AAGGUCG:GGG UCGAA 266738 GUGGAUAUAGCUCAGUuGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAA 266797 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:AUCC:CA 266798 CCCACUAUCCACA 266810 ----endhit ----hitSequence: GUGGAUGUAGCUCAGUUGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAACCCACCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,0,0 hit 167 : 247306 247234 (rev) 71.17 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCAGU GG AGAGC+U::GA+U+U UC::AAGGUCG:GGG UCGAA 266487 GUGGAUGUAGCUCAGUuGGAAGAGCGUAAGAUUGUGGCUCUUAAGGUCGUGGGAUCGAAA 266546 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 266547 CCCACCAUCCACA 266559 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #592,emb|8254489| 120183 bp 1 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 168 : 97837 97917 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 97837 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 97894 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 97895 AGGUUCGAAUCCUGCAGCUGACG 97917 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #592,emb|8254489| 120183 bp 1 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 169 : 98101 98181 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 98101 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 98158 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 98159 AGGUUCGAAUCCUGCAGCUGACG 98181 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #592,emb|8254489| 120183 bp 1 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 170 : 98549 98629 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 98549 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 98606 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 98607 AGGUUCGAAUCCUGCAGCUGACG 98629 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #620,emb|8254637| 226025 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCCUCAUAGUCUAGUUGGUUAUGAUACAAGGUUCUCACCCUUGAGACCCGGGUUCAAAUCCCGGUGAGGGAG ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,1 hit 171 : 82114 82186 (fwd) 66.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::::UA::::AGU GGU A::::A:::G:+U U A :C:::AG+ C:CGGGUUC+AA 82114 UCCCUCAUAGUCUAGUuGGUuAUGAUACAAGGUUCUCACCCUUGAGA-CCCGGGUUCAAA 82172 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG:::::::: 82173 UCCCGGUGAGGGAG 82186 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #621,emb|8254491| 250031 bp 2 contigs ----isReversed: 0 ----hitSequence: UCUUUAAUAUUAGAAAUUAAUUAAAAUUAAAUUUUUUAUGAUAAAUUUAAAAUAUUUUUAAAGAA ----ssRNAplot: (((((((..((((...)))).(((((.......)))))....((((.......))))))))))). ----hitGC: 0.0615385 ----pairStats: 21,1,1,0 hit 172 : 156817 156881 (fwd) 26.45 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :::::::UA::: A+ A ::: U:::A+U ++ U:::A+G+ +:::: UU +AAU 156817 UCUUUAAUAUUAGAA----AUUAAUUAAAAUUAAAUUUUUUAUGA-UAAAU-UUAAAAU- 156869 >>>>))))))): 61 CcgccaucccCA 72 :::::::::::A 156870 AUUUUUAAAGAA 156881 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #624,emb|8254638| 979488 bp 2 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 173 : 817471 817542 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 817471 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 817529 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 817530 CCCGGUCUCGGAG 817542 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #624,emb|8254638| 979488 bp 2 contigs ----isReversed: 1 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 174 : 978904 978831 (rev) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 585 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 644 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 645 CCCCUCCCGGAGCA 658 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #638,emb|8254496| 209627 bp 2 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGUGGUCUAAGGCGGUAGAUUUAGGCUCUAUUCCGAAAGGGCGAGGGUUCGAACCCCUCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 175 : 113031 112952 (rev) 61.49 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AGUGGU A::GC+:::GA+UU+ UC:::+ G CG:G 96597 GAUGAAGUGGCCGAGUGGUcuAAGGCGGUAGAUUUAGGCUCUAUU-ccgaaaggG-CGAG 96654 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 GGUUCGAA CCC:CC:UC::CA 96655 GGUUCGAACCCCUCCUUCAUCA 96676 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #638,emb|8254496| 209627 bp 2 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGUGGUCUAAGGCGGUAGAUUUAGGCUCUAUUCCGAAAGGGCGAGGGUUCGAACCCCUCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 176 : 112740 112661 (rev) 61.49 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AGUGGU A::GC+:::GA+UU+ UC:::+ G CG:G 96888 GAUGAAGUGGCCGAGUGGUcuAAGGCGGUAGAUUUAGGCUCUAUU-ccgaaaggG-CGAG 96945 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 GGUUCGAA CCC:CC:UC::CA 96946 GGUUCGAACCCCUCCUUCAUCA 96967 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #638,emb|8254496| 209627 bp 2 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGUGGUCUAAGGCGGUAGAUUUAGGCUCUAUUCCGAAAGGGCGAGGGUUCGAACCCCUCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 177 : 112481 112402 (rev) 61.49 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AGUGGU A::GC+:::GA+UU+ UC:::+ G CG:G 97147 GAUGAAGUGGCCGAGUGGUcuAAGGCGGUAGAUUUAGGCUCUAUU-ccgaaaggG-CGAG 97204 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 GGUUCGAA CCC:CC:UC::CA 97205 GGUUCGAACCCCUCCUUCAUCA 97226 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #640,emb|8254497| 69572 bp 2 contigs ----isReversed: 0 ----hitSequence: UCUCGGAUAGCUUAGUUGGUUAUAGUAUGGGUUAAAUAACCCAAGAUCGAGGGUUCAAGCCCUUCCUGGAGCA ----ssRNAplot: (((((((..((((.........)))).((((........)))).....(((((.......)))))))))))). ----hitGC: 0.452055 ----pairStats: 21,1,3,4 hit 178 : 6986 7058 (fwd) 25.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______.>>>>>,,,,,<<<<<_____ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAA.uCcgaaGgUcgcgGGUUCgA 57 ::: UA:CU:AGU GGU A:AG:AU:GG UU++A CC:AAG+UCG: GGUUC+A 6986 UCUCGGAUAGCUUAGUuGGUuAUAGUAUGGG--UUAAAUaACCCAAGAUCGAGGGUUCAA 7043 __>>>>>))))))): 58 aUCCcgccaucccCA 72 CC :C ::: A 7044 GCCCUUCCUGGAGCA 7058 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 179 : 6811 6884 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 6811 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 6870 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 6871 CCCCUCCCGGAGCA 6884 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 180 : 6632 6705 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 6632 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 6691 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 6692 CCCCUCCCGGAGCA 6705 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 181 : 6428 6501 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 6428 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 6487 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 6488 CCCCUCCCGGAGCA 6501 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 182 : 6229 6302 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 6229 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 6288 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 6289 CCCCUCCCGGAGCA 6302 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 183 : 6050 6123 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 6050 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 6109 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 6110 CCCCUCCCGGAGCA 6123 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 184 : 5858 5931 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 5858 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 5917 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 5918 CCCCUCCCGGAGCA 5931 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 185 : 5679 5752 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 5679 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 5738 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 5739 CCCCUCCCGGAGCA 5752 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 186 : 5458 5531 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 5458 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 5517 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 5518 CCCCUCCCGGAGCA 5531 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 187 : 5266 5339 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 5266 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 5325 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 5326 CCCCUCCCGGAGCA 5339 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 188 : 5044 5117 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 5044 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 5103 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 5104 CCCCUCCCGGAGCA 5117 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 189 : 4852 4925 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 4852 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 4911 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 4912 CCCCUCCCGGAGCA 4925 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 190 : 4679 4752 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 4679 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 4738 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 4739 CCCCUCCCGGAGCA 4752 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 191 : 4488 4561 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 4488 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 4547 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 4548 CCCCUCCCGGAGCA 4561 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #640,emb|8254497| 69572 bp 2 contigs ----isReversed: 0 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCGAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.594595 ----pairStats: 21,0,1,1 hit 192 : 7157 7230 (fwd) 67.52 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+ :GG:CU +UAA:CC: AGGUCG:GGGUUC+A 7157 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCGAGGUCGAGGGUUCAAG 7216 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 7217 CCCCUCCCGGAGCA 7230 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #640,emb|8254497| 69572 bp 2 contigs ----isReversed: 0 ----hitSequence: GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCCCCGGAUUGCCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,1 hit 193 : 26889 26960 (fwd) 61.41 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG:A::U+::::AGUGGUA:::: :::G:+UU :C:::AGGUC:CGGGUUC+A+ C 26889 GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCC 26948 >>>>))))))): 61 CcgccaucccCA 72 CCG:::U:CCC 26949 CCGGAUUGCCCC 26960 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAAUGGUUAGUAUUCCUGCCUGUUGAUAGUCAGGAGAAUCAGGUUCAAUUCCUGGACUCGGAG ----ssRNAplot: (((((((..((((........)))).((((............))))....(((((.......)))))))))))). ----hitGC: 0.44 ----pairStats: 21,1,3,1 hit 194 : 52743 52817 (fwd) 33.74 bits (((((((,,<<<<______._>>>>,<<<<<_______....>>>>>,,,,,<<<<<___ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAA....uCcgaaGgUcgcgGGUUC 55 :::GA: UA::::A+UGGU A:::: :C:G CU+UU A C:G:AG+ C:GGUUC 52743 UCCGAGAUAGUAUAAUGGUuAGUAUUCCUGCCUGUUGAuagu-CAGGAGA-AUCAGGUUC 52800 ____>>>>>))))))): 56 gAaUCCcgccaucccCA 72 +A+UCC:G :UC::: 52801 AAUUCCUGGACUCGGAG 52817 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 195 : 54700 54771 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 54700 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 54758 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 54759 CCCGGUCUCGGAG 54771 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAAUUGUAGCUCAGCUGGGAGAGCGAAAGAAUCCAAAUCUUUAGGUCAAAGGUUCAAAUCCUUUCAAUUCCC ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.424658 ----pairStats: 21,0,0,0 hit 196 : 26994 26922 (rev) 68.37 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG:::UGUAGCUCAG GG AGAGC+:::GA U +AAUC:::AGGUC:::GGUUC+AAU 329958 GGAAUUGUAGCUCAGCuGGGAGAGCGAAAGAAUCCAAAUCUUUAGGUCAAAGGUUCAAAU 330017 >>>>>))))))): 60 CCcgccaucccCA 72 CC:::CA:::CC 330018 CCUUUCAAUUCCC 330030 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAAUUGUAGCUCAGUUGGUAGAGCGGAGGCAGCCAAAACCUCAGGCCAAAGGUUCAAGUCCUUUCAAUUCCC ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,0,1 hit 197 : 26707 26635 (rev) 51.88 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG:::UGUAGCUCAGU GGUAGAGC+::GG +AA CC::AGG C:::GGUUC+A U 330245 GGAAUUGUAGCUCAGUuGGUAGAGCGGAGGCAGCCAAAACCUCAGGCCAAAGGUUCAAGU 330304 >>>>>))))))): 60 CCcgccaucccCA 72 CC:::CA:::CC 330305 CCUUUCAAUUCCC 330317 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAAUUGUAGCUCAGUUGGGAGAGCAGAGGAAUCCAGAUCCUCCGGUCAAAGGUUCAAACCCUUUCAAUUCCC ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.493151 ----pairStats: 21,0,0,0 hit 198 : 26404 26332 (rev) 63.09 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG:::UGUAGCUCAGU GG AGAGCA::GGA U + AUCC:: GGUC:::GGUUC+AA 330548 GGAAUUGUAGCUCAGUuGGGAGAGCAGAGGAAUCCAGAUCCUCCGGUCAAAGGUUCAAAC 330607 >>>>>))))))): 60 CCcgccaucccCA 72 CC:::CA:::CC 330608 CCUUUCAAUUCCC 330620 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 1 ----hitSequence: AGAAUUGUAGCUCAGUUGGAAGAGCGGAGGAAUCCAGAUCCUUUGGUCAAAGGUUCAAACCUUUUCAAUUCCC ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.438356 ----pairStats: 21,0,2,1 hit 199 : 25937 25865 (rev) 53.32 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:::UGUAGCUCAGU GG AGAGC+::GGA U + AUCC::+GGUC::: GUUC+AA 331015 AGAAUUGUAGCUCAGUuGGAAGAGCGGAGGAAUCCAGAUCCUUUGGUCAAAGGUUCAAAC 331074 >>>>>))))))): 60 CCcgccaucccCA 72 C :::CA:::C 331075 CUUUUCAAUUCCC 331087 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #656,emb|8254644| 356951 bp 1 contigs ----isReversed: 1 ----hitSequence: GGAAUUGUAGCUCAGUUGGGAGAGCGGAAGAAUCCAAAUCUUUAGGUCAAAGGUUCAAAUCCUUUCAAUUCCC ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.424658 ----pairStats: 21,0,1,0 hit 200 : 24297 24225 (rev) 68.79 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG:::UGUAGCUCAGU GG AGAGC+:::GA U +AAUC:::AGGUC:::GGUUC+AAU 332655 GGAAUUGUAGCUCAGUuGGGAGAGCGGAAGAAUCCAAAUCUUUAGGUCAAAGGUUCAAAU 332714 >>>>>))))))): 60 CCcgccaucccCA 72 CC:::CA:::CC 332715 CCUUUCAAUUCCC 332727 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 201 : 738163 738234 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 738163 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 738222 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 738223 CCACCUUGGUUG 738234 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 202 : 738577 738648 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 738577 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 738636 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 738637 CCACCUUGGUUG 738648 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 203 : 739146 739217 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 739146 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 739205 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 739206 CCACCUUGGUUG 739217 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 204 : 739629 739700 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 739629 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 739688 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 739689 CCACCUUGGUUG 739700 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 205 : 740064 740135 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 740064 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 740123 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 740124 CCACCUUGGUUG 740135 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 206 : 740637 740708 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 740637 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 740696 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 740697 CCACCUUGGUUG 740708 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 207 : 740998 741069 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 740998 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 741057 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 741058 CCACCUUGGUUG 741069 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 208 : 741446 741517 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 741446 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 741505 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 741506 CCACCUUGGUUG 741517 ----endhit ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 209 : 741304 741375 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 741304 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 741363 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 741364 CCACCUUGGUUG 741375 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 210 : 831352 831269 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 244950 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 245009 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 245010 CCGGUUCGAACCCGGGAGUUCGGA 245033 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 211 : 770417 770345 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 305885 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 305944 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 305945 CCCACGGCGGGCU 305957 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 212 : 765528 765456 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 310774 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 310833 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 310834 CCCACGGCGGGCU 310846 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 213 : 764956 764884 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 311346 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 311405 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 311406 CCCACGGCGGGCU 311418 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #662,emb|8254646| 232128 bp 6 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 214 : 45275 45347 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 45275 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 45334 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 45335 CCCAGGUUCUCCA 45347 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #662,emb|8254646| 232128 bp 6 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 215 : 49511 49583 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 49511 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 49570 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 49571 CCCAGGUUCUCCA 49583 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #662,emb|8254646| 232128 bp 6 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 216 : 83042 83113 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 83042 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 83100 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 83101 CCCGGUCUCGGAG 83113 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #662,emb|8254646| 232128 bp 6 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 217 : 119833 119904 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 119833 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 119891 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 119892 CCCGGUCUCGGAG 119904 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #662,emb|8254646| 232128 bp 6 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 218 : 95637 95566 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 136492 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 136550 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 136551 CCCGGUCUCGGAG 136563 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 0 ----hitSequence: GGUUCUAUAGUAUAGCGGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUAGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 219 : 220908 220979 (fwd) 66.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:UAG:::AG GGU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 220908 GGUUCUAUAGUAUAGCGGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 220966 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 220967 CCCAGUAGGACCU 220979 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 220 : 429860 429931 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 429860 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 429918 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 429919 CCCGGUCUCGGAG 429931 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 221 : 754797 754868 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 754797 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 754855 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 754856 CCCGGUCUCGGAG 754868 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 222 : 801402 801319 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 18226 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 18285 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 18286 CCGGUUCGAACCCGGGAGUUCGGA 18309 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGCUGGAAGAGCGUCGGACUGUAAAGUUUGUAGUCAUCCGUAGGUCCCCAGUUCGAUCCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,0,2 hit 223 : 801152 801069 (rev) 42.85 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAG GG AGAGC+ CGGACU+U+AA UCCG AGGUC: 18476 CCGAACUUAGCUCAGCuGGAAGAGCGUCGGACUGUAAAguuuguagucaUCCGUAGGUCC 18535 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C: GUUCGA+ C :G:::U:C::A 18536 CCAGUUCGAUCCCGGGAGUUCGGA 18559 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 224 : 800710 800627 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 18918 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 18977 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 18978 CCGGUUCGAACCCGGGAGUUCGGA 19001 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: CCAAAUUUAGCUCAGUUGGAAGAGCGUCGGACUGUAAAGUUUGUAGUCAUCCUUAGGUCCCGGUUCGAACCCGGGAGUUUGGA ----ssRNAplot: (((((((..((((........)))).(((((..................)))))....(((((.......)))))))))))). ----hitGC: 0.493976 ----pairStats: 21,0,1,2 hit 225 : 800446 800364 (rev) 41.58 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::::A+:UAGCUCAGU GG AGAGC+ GGACU+U+AA UCC AGG +: 19182 CCAAAUUUAGCUCAGUuGGAAGAGCGUCGGACUGUAAAguuuguagucaUCCUUAGG-UC 19240 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G::+U::::A 19241 CCGGUUCGAACCCGGGAGUUUGGA 19264 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 226 : 800198 800115 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 19430 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 19489 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 19490 CCGGUUCGAACCCGGGAGUUCGGA 19513 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 227 : 799769 799686 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 19859 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 19918 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 19919 CCGGUUCGAACCCGGGAGUUCGGA 19942 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 228 : 799510 799427 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 20118 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 20177 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 20178 CCGGUUCGAACCCGGGAGUUCGGA 20201 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 229 : 799074 799001 (rev) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 20554 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 20613 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 20614 CCCCUCCGCAGGCA 20627 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 230 : 784583 784511 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 35045 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 35104 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 35105 CCCACGGCGGGCU 35117 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: GGUUCUAUAGUAUAGCGGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUAGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 231 : 766536 766465 (rev) 66.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:UAG:::AG GGU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 53092 GGUUCUAUAGUAUAGCGGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 53150 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 53151 CCCAGUAGGACCU 53163 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 232 : 10043 9971 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 809585 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 809643 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 809644 UCCCGGUGGGGGAA 809657 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 233 : 701411 701483 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 701411 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 701469 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 701470 UCCCGGUGGGGGAA 701483 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 234 : 996314 996243 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 235593 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 235651 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 235652 CCCGGUCUCGGAG 235664 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 235 : 34184 34101 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 1197723 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 1197782 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 1197783 CCGGUUCGAACCCGGGAGUUCGGA 1197806 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #681,emb|8253850| 425044 bp 4 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUGGUGUAGUGGAAAGCAUUGCAGCUUGUCUCGCUGCAGACCUGGGUUCAAUUCCCAGUCUUGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,3,0 hit 236 : 423812 423883 (fwd) 53.25 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 ::: A::U+::::AGUGG A:::: :C:G:+U+U :C:G:AG+ C::GGGUUC+A+U 423812 UCCGAGAUGGUGUAGUGGAaAGCAUUGCAGCUUGUCUCGCUGCAGA-CCUGGGUUCAAUU 423870 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::U ::: 423871 CCCAGUCUUGGAG 423883 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #681,emb|8253850| 425044 bp 4 contigs ----isReversed: 1 ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 237 : 124792 124721 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 300253 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 300312 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 300313 CGGCAGGUCCCU 300324 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 238 : 125045 124974 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 300000 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 300059 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 300060 CGGCAGGUCCCU 300071 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #683,emb|8254653| 369266 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 239 : 342615 342536 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 26652 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 26709 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 26710 AGUUCGAAUCUCGCCUUCAUCA 26731 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #683,emb|8254653| 369266 bp 6 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 240 : 136124 136052 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 233143 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 233202 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 233203 CCGAGUGAAGGCA 233215 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #683,emb|8254653| 369266 bp 6 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 241 : 54003 53931 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 315264 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 315323 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 315324 CCCACGGCGGGCU 315336 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #686,emb|8254654| 510086 bp 17 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 242 : 501627 501699 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 501627 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 501686 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 501687 CCCACGGCGGGCU 501699 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #695,emb|8254657| 295151 bp 4 contigs ----isReversed: 0 ----hitSequence: GAUUUCUUAGUGUAGUGGUUAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUCCUCGGAGAAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.438356 ----pairStats: 21,0,0,1 hit 243 : 64966 65038 (fwd) 70.75 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CUU+ A :C:GAAGGUC:CG:GUUC+A+ 64966 GAUUUCUUAGUGUAGUGGUuAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUC 65025 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 65026 CUCGGAGAAAUCA 65038 ----endhit ----hitSequence: GAUUUCUUAGUGUAGUGGUUAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUCCUCGGAGAAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.438356 ----pairStats: 21,0,0,1 hit 244 : 64730 64802 (fwd) 70.75 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CUU+ A :C:GAAGGUC:CG:GUUC+A+ 64730 GAUUUCUUAGUGUAGUGGUuAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUC 64789 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 64790 CUCGGAGAAAUCA 64802 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #695,emb|8254657| 295151 bp 4 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 245 : 157956 158028 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 157956 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 158014 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 158015 UCCCGGUGGGGGAA 158028 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #696,emb|8253855| 88028 bp 4 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 246 : 33801 33882 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 33801 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 33858 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 33859 UGAGUUCAAUUCUCACAGGUGUCG 33882 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #696,emb|8253855| 88028 bp 4 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 247 : 34296 34377 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 34296 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 34353 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 34354 UGAGUUCAAUUCUCACAGGUGUCG 34377 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #696,emb|8253855| 88028 bp 4 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 248 : 35097 35178 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 35097 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 35154 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 35155 UGAGUUCAAUUCUCACAGGUGUCG 35178 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #697,emb|8254658| 337613 bp 4 contigs ----isReversed: 1 ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCAUCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 249 : 148589 148518 (rev) 73.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G G :::U+GCUCA+UGGUAGAGCAUC:GACU AUC:GAAGGU+GC:GGUUCGA UC 189025 GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 189084 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: C C 189085 CUGCUCAUCUCG 189096 ----endhit ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCAUCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 250 : 148844 148773 (rev) 73.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G G :::U+GCUCA+UGGUAGAGCAUC:GACU AUC:GAAGGU+GC:GGUUCGA UC 188770 GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 188829 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: C C 188830 CUGCUCAUCUCG 188841 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #697,emb|8254658| 337613 bp 4 contigs ----isReversed: 1 ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCUUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCACCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,0 hit 251 : 148334 148263 (rev) 74.07 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G GG:::U+GCUCA+UGGUAGAGC UC:GACU AUC:GAAGGU+GC:GGUUCGA UC 189280 GGGGUGAUGGCUCAAUGGUAGAGCUUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 189339 >>>>))))))): 61 CcgccaucccCA 72 C:GC:::CC C 189340 CUGCUCACCUCG 189351 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #697,emb|8254658| 337613 bp 4 contigs ----isReversed: 1 ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCAUCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 252 : 147794 147723 (rev) 73.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G G :::U+GCUCA+UGGUAGAGCAUC:GACU AUC:GAAGGU+GC:GGUUCGA UC 189820 GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 189879 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: C C 189880 CUGCUCAUCUCG 189891 ----endhit ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCAUCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 253 : 147935 147864 (rev) 73.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G G :::U+GCUCA+UGGUAGAGCAUC:GACU AUC:GAAGGU+GC:GGUUCGA UC 189679 GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 189738 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: C C 189739 CUGCUCAUCUCG 189750 ----endhit ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCUUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCACCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,0 hit 254 : 148085 148014 (rev) 74.07 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G GG:::U+GCUCA+UGGUAGAGC UC:GACU AUC:GAAGGU+GC:GGUUCGA UC 189529 GGGGUGAUGGCUCAAUGGUAGAGCUUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 189588 >>>>))))))): 61 CcgccaucccCA 72 C:GC:::CC C 189589 CUGCUCACCUCG 189600 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #697,emb|8254658| 337613 bp 4 contigs ----isReversed: 1 ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCAUCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 255 : 147475 147404 (rev) 73.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G G :::U+GCUCA+UGGUAGAGCAUC:GACU AUC:GAAGGU+GC:GGUUCGA UC 190139 GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 190198 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: C C 190199 CUGCUCAUCUCG 190210 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #697,emb|8254658| 337613 bp 4 contigs ----isReversed: 1 ----hitSequence: GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUCCUGCUCAUCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 256 : 147195 147124 (rev) 73.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G G :::U+GCUCA+UGGUAGAGCAUC:GACU AUC:GAAGGU+GC:GGUUCGA UC 190419 GGGGUGAUGGCUCAAUGGUAGAGCAUCUGACUACGGAUCAGAAGGUUGCAGGUUCGAGUC 190478 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: C C 190479 CUGCUCAUCUCG 190490 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #699,emb|8254659| 1557438 bp 6 contigs ----isReversed: 0 ----hitSequence: GAUUUCUUAGUGUAGUGGUUAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUCCUCGGAGAAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.438356 ----pairStats: 21,0,0,1 hit 257 : 881210 881282 (fwd) 70.75 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CUU+ A :C:GAAGGUC:CG:GUUC+A+ 881210 GAUUUCUUAGUGUAGUGGUuAUCACGUCAGUCUUACACACUGAAGGUCCCGAGUUCAAUC 881269 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 881270 CUCGGAGAAAUCA 881282 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #699,emb|8254659| 1557438 bp 6 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 258 : 1252632 1252560 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 304807 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 304866 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 304867 CCCACGGCGGGCU 304879 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 0 ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 259 : 928962 929035 (fwd) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 928962 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 929021 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 929022 CCCUUCACCGAGCG 929035 ----endhit ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 260 : 928764 928837 (fwd) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 928764 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 928823 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 928824 CCCUUCACCGAGCG 928837 ----endhit ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 261 : 928563 928636 (fwd) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 928563 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 928622 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 928623 CCCUUCACCGAGCG 928636 ----endhit ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 262 : 928370 928443 (fwd) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 928370 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 928429 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 928430 CCCUUCACCGAGCG 928443 ----endhit ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 263 : 928214 928287 (fwd) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 928214 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 928273 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 928274 CCCUUCACCGAGCG 928287 ----endhit ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 264 : 928029 928102 (fwd) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 928029 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 928088 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 928089 CCCUUCACCGAGCG 928102 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 0 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 265 : 1309391 1309463 (fwd) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 1309391 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 1309450 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 1309451 CCGAGUGAAGGCA 1309463 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 0 ----hitSequence: GUUUUUUUCAUUUUAUAAAAUAAAAAAAUAUUAAUUUUUUUUUUAAGUGUUUUUUAUUAAAGUUAAAAAAAAAAUA ----ssRNAplot: (((((((..((((....)))).(((((.......)))))............(((((.......)))))))))))). ----hitGC: 0.0657895 ----pairStats: 21,0,1,0 hit 266 : 1363416 1363491 (fwd) 25.49 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,........,,,<<<<< 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaG........gUcgcgGG 52 :::::U:U ::U: +U A:A::A::::A U UUAAU::::+ GU+::::: 1363416 GUUUUUUUCAUUUUAU---AAAAUAAAAAAAUAUUAAUUUUUU-uuuuaaguGUUUUUUA 1363471 _______>>>>>))))))): 53 UUCgAaUCCcgccaucccCA 72 UU +A U::::::A:::::A 1363472 UUAAAGUUAAAAAAAAAAUA 1363491 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 267 : 1794818 1794889 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 1794818 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 1794876 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 1794877 CCCGGUCUCGGAG 1794889 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 268 : 1648093 1648011 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 568066 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 568123 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 568124 GUGAGUUCGAAUCUCACAGUUGCCA 568148 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 269 : 428442 428370 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 1787717 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 1787776 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 1787777 CCCUCGGUGGGUG 1787789 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 270 : 426780 426708 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 1789379 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 1789438 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 1789439 CCCUCGGUGGGUG 1789451 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 271 : 425983 425911 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 1790176 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 1790235 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 1790236 CCCUCGGUGGGUG 1790248 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 272 : 36021 35951 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 2180138 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 2180196 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 2180197 CCGGUCGGUGCA 2180208 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 273 : 35706 35636 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 2180453 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 2180511 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 2180512 CCGGUCGGUGCA 2180523 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #725,emb|8254807| 464229 bp 2 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 274 : 123973 123900 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 340257 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 340316 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 340317 CCCUACAUCGAGCG 340330 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #733,emb|8254663| 210363 bp 3 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 275 : 142061 142133 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 142061 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 142120 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 142121 CCCACGGCGGGCU 142133 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #733,emb|8254663| 210363 bp 3 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 276 : 145603 145675 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 145603 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 145662 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 145663 CCCACGGCGGGCU 145675 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #733,emb|8254663| 210363 bp 3 contigs ----isReversed: 1 ----hitSequence: GCUCAGAUAGCUCAGUUGGUUAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAGCCCCACUUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.513514 ----pairStats: 21,0,2,0 hit 277 : 185480 185407 (rev) 74.21 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A :UAGCUCAGU GGU AGAGC U:GG CUU+U A CC:AAGGUCG:GGGUUCGA 24884 GCUCAGAUAGCUCAGUuGGUuAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAG 24943 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:C: U:::CA 24944 CCCCACUUUGAGCA 24957 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #733,emb|8254663| 210363 bp 3 contigs ----isReversed: 1 ----hitSequence: GCUCAGAUAGCUCAGUUGGUUAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAGCCCCACUUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.513514 ----pairStats: 21,0,2,0 hit 278 : 185197 185124 (rev) 74.21 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A :UAGCUCAGU GGU AGAGC U:GG CUU+U A CC:AAGGUCG:GGGUUCGA 25167 GCUCAGAUAGCUCAGUuGGUuAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAG 25226 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:C: U:::CA 25227 CCCCACUUUGAGCA 25240 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #733,emb|8254663| 210363 bp 3 contigs ----isReversed: 1 ----hitSequence: GCUCAGAUAGCUCAGUUGGUUAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAGCCCCACUUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.513514 ----pairStats: 21,0,2,0 hit 279 : 184888 184815 (rev) 74.21 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A :UAGCUCAGU GGU AGAGC U:GG CUU+U A CC:AAGGUCG:GGGUUCGA 25476 GCUCAGAUAGCUCAGUuGGUuAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAG 25535 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:C: U:::CA 25536 CCCCACUUUGAGCA 25549 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #733,emb|8254663| 210363 bp 3 contigs ----isReversed: 1 ----hitSequence: GCUCAGAUAGCUCAGUUGGUUAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAGCCCCACUUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.513514 ----pairStats: 21,0,2,0 hit 280 : 181349 181276 (rev) 74.21 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A :UAGCUCAGU GGU AGAGC U:GG CUU+U A CC:AAGGUCG:GGGUUCGA 29015 GCUCAGAUAGCUCAGUuGGUuAGAGCUUUGGUCUUAUGAGCCAAAGGUCGUGGGUUCGAG 29074 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:C: U:::CA 29075 CCCCACUUUGAGCA 29088 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #739,emb|8254665| 877599 bp 13 contigs ----isReversed: 0 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 281 : 371028 371110 (fwd) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 371028 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 371085 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 371086 GUGAGUUCGAAUCUCACAGUUGCCA 371110 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #742,emb|8254666| 596578 bp 8 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 282 : 74134 74215 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 74134 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 74191 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 74192 UGAGUUCAAUUCUCACAGGUGUCG 74215 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #742,emb|8254666| 596578 bp 8 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 283 : 368467 368395 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 228112 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 228171 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 228172 CUCGGAGGAAUCA 228184 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #742,emb|8254666| 596578 bp 8 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 284 : 149924 149852 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 446655 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 446714 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 446715 CUCGGAGGAAUCA 446727 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #742,emb|8254666| 596578 bp 8 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 285 : 81500 81427 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 515079 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 515138 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 515139 CCCUACAUCGAGCG 515152 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #742,emb|8254666| 596578 bp 8 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 286 : 74343 74270 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 522236 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 522295 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 522296 CCCUACAUCGAGCG 522309 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #758,emb|8254811| 1389364 bp 15 contigs ----isReversed: 0 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 287 : 486483 486556 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 486483 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 486542 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 486543 CCCCUCCGCAGGCA 486556 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #758,emb|8254811| 1389364 bp 15 contigs ----isReversed: 0 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 288 : 844233 844305 (fwd) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 844233 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 844292 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 844293 CCGCCAAGUGGCU 844305 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #758,emb|8254811| 1389364 bp 15 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 289 : 1163980 1163908 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 225385 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 225444 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 225445 CCCACGGCGGGCU 225457 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #758,emb|8254811| 1389364 bp 15 contigs ----isReversed: 1 ----hitSequence: GUUCGUUUAGUGUAGUGGUUAUCACGUUCCCUUCACACGGGAAAGGCCCCGAGUUCGACCCUCGGAAUGAACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,1 hit 290 : 891381 891309 (rev) 60.77 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::: U:UAG:::AGUGGU A:::C+U::::+U + A ::::AAGG C:CG:GUUCGA 497984 GUUCGUUUAGUGUAGUGGUuAUCACGUUCCCUUCACACGGGAAAGGCCCCGAGUUCGACC 498043 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG::A :::CA 498044 CUCGGAAUGAACA 498056 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #758,emb|8254811| 1389364 bp 15 contigs ----isReversed: 1 ----hitSequence: GUUCGUUUAGUGUAGUGGUUAUCACGUUCCCUUCACACGGGAAAGGUCCCGAGUUCAAUCCUCGGAAUGAACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,1,1 hit 291 : 891007 890935 (rev) 65.23 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::: U:UAG:::AGUGGU A:::C+U::::+U + A ::::AAGGUC:CG:GUUC+A+ 498358 GUUCGUUUAGUGUAGUGGUuAUCACGUUCCCUUCACACGGGAAAGGUCCCGAGUUCAAUC 498417 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG::A :::CA 498418 CUCGGAAUGAACA 498430 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #762,emb|8254813| 622914 bp 11 contigs ----isReversed: 1 ----hitSequence: UCAAAAAUAGUUUUAAUGGAGAAAAAUAAAUUUUAAAUUGAUUAAUUUAUUUUAAGAAUAAUUUAUGAA ----ssRNAplot: (((((((...((((......)))).(((((.......)))))....((((.......))))))))))). ----hitGC: 0.115942 ----pairStats: 21,1,1,2 hit 292 : 3910 3842 (rev) 25.15 bits (((((((,,.<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUA.GCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 ::: A::UA ::U:A+UGG A:A::A:: :A+UUU+AAU: ::+++ +:::: UU +A 619005 UCAAAAAUAgUUUUAAUGG-AGAAAAAUAAAUUUUAAAUUGAUUAA-UUUAU-UUUAAGA 619061 >>>>>))))))): 60 CCcgccaucccCA 72 ::::::U :::A 619062 -AUAAUUUAUGAA 619073 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGNN ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,1 hit 293 : 186426 186498 (fwd) 62.10 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 ::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 186426 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 186485 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+:::: 186486 CCGAGUGAAGGNN 186498 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 294 : 193305 193377 (fwd) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 193305 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 193364 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 193365 CCGAGUGAAGGCA 193377 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 295 : 261812 261884 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 261812 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 261871 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 261872 CCCACGGCGGGCU 261884 ----endhit ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 296 : 261615 261687 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 261615 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 261674 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 261675 CCCACGGCGGGCU 261687 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 297 : 385918 385989 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 385918 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 385977 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 385978 CCACCUUGGUUG 385989 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 298 : 400371 400442 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 400371 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 400430 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 400431 CCACCUUGGUUG 400442 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 299 : 521719 521791 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 521719 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 521778 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 521779 CCCAGGUUCUCCA 521791 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 300 : 523276 523204 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 67939 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 67998 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 67999 CCCAGGUUCUCCA 68011 ----endhit ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 301 : 523426 523355 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 67789 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 67848 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 67849 CCACCUUGGUUG 67860 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 302 : 517485 517413 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 73730 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 73789 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 73790 CCCAGGUUCUCCA 73802 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 303 : 517219 517148 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 73996 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 74055 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 74056 CCACCUUGGUUG 74067 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 304 : 516838 516766 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 74377 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 74436 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 74437 CCCAGGUUCUCCA 74449 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 305 : 213405 213333 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 377810 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 377869 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 377870 CCGAGUGAAGGCA 377882 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 306 : 79586 79515 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 511629 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 511687 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 511688 CCCAGUGGGACCU 511700 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 307 : 79076 79005 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 512139 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 512197 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 512198 CCCAGUGGGACCU 512210 ----endhit ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 308 : 79304 79233 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 511911 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 511969 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 511970 CCCAGUGGGACCU 511982 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 309 : 78812 78741 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 512403 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 512461 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 512462 CCCAGUGGGACCU 512474 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 310 : 53222 53150 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 537993 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 538052 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 538053 CUCGGAGGAAUCA 538065 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 1 ----hitSequence: AUAAAUAUAUUUUAAACAAAAAAAUUAUUUUUAAAAUAAAAAUAUAACAAAUUCUAUUUUUUUAUUUAUA ----ssRNAplot: (((((((..((((.....)))).(((((.......))))).....((..((.......))))))))))). ----hitGC: 0.0428571 ----pairStats: 21,1,0,1 hit 311 : 684548 684479 (rev) 27.12 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<.<<______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcg.GGUUCgAa 58 ::::AU:UA::U:A+ A:A::A ::::+UUU+AA:::: A+ +:: ::UUC A+ 224761 AUAAAUAUAUUUUAAAc---AAAAAAAUUAUUUUUAAAAUAAAAAUAUAACaAAUUCUAU 224817 _>>>>>))))))): 59 UCCcgccaucccCA 72 U:: :::AU::::A 224818 UUU-UUUAUUUAUA 224830 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #772,emb|8254670| 254291 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 312 : 159158 159230 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 159158 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 159216 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 159217 UCCCGGUGGGGGAA 159230 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #772,emb|8254670| 254291 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 313 : 180583 180655 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 180583 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 180641 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 180642 UCCCGGUGGGGGAA 180655 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #772,emb|8254670| 254291 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 314 : 186693 186765 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 186693 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 186751 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 186752 UCCCGGUGGGGGAA 186765 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #772,emb|8254670| 254291 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 315 : 204112 204184 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 204112 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 204170 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 204171 UCCCGGUGGGGGAA 204184 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #772,emb|8254670| 254291 bp 5 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 316 : 241990 241917 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 12302 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 12361 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 12362 CCCUACAUCGAGCG 12375 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 0 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 317 : 730949 731032 (fwd) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 730949 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 731008 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 731009 CCGGUUCGAACCCGGGAGUUCGGA 731032 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #782,emb|8254819| 1807540 bp 14 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 318 : 1325684 1325614 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 481857 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 481915 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 481916 CCGGUCGGUGCA 481927 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #783,emb|8254673| 199572 bp 6 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 319 : 92041 92112 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 92041 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 92099 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 92100 CCCAGUGGGACCU 92112 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #783,emb|8254673| 199572 bp 6 contigs ----isReversed: 0 ----hitSequence: GGUUCUAUAGUAUAGCGGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUAGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 320 : 92673 92744 (fwd) 66.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:UAG:::AG GGU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 92673 GGUUCUAUAGUAUAGCGGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 92731 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 92732 CCCAGUAGGACCU 92744 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #783,emb|8254673| 199572 bp 6 contigs ----isReversed: 0 ----hitSequence: GGUUCUAUAGUAUAGCGGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUAGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 321 : 92914 92985 (fwd) 66.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:UAG:::AG GGU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 92914 GGUUCUAUAGUAUAGCGGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 92972 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 92973 CCCAGUAGGACCU 92985 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 322 : 141778 141849 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 141778 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 141837 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 141838 UCGGACGACCCC 141849 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 323 : 106212 106141 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 162569 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 162628 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 162629 UCGGACGACCCC 162640 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 324 : 105652 105581 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 163129 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 163188 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 163189 UCGGACGACCCC 163200 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #786,emb|8254674| 268780 bp 12 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 325 : 98959 98888 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 169822 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 169881 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 169882 UCGGACGACCCC 169893 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #790,emb|8253873| 25773 bp 1 contigs ----isReversed: 0 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 326 : 23391 23463 (fwd) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 23391 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 23450 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 23451 CCCUCGGUGGGUG 23463 ----endhit ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 327 : 23174 23246 (fwd) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 23174 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 23233 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 23234 CCCUCGGUGGGUG 23246 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #795,emb|8254677| 94137 bp 2 contigs ----isReversed: 0 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 328 : 44724 44795 (fwd) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 44724 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 44783 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 44784 CUCUCUCUGCUA 44795 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #799,emb|8254679| 65021 bp 3 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 329 : 45257 45174 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 19765 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 19824 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 19825 CCGGUUCGAACCCGGGAGUUCGGA 19848 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #799,emb|8254679| 65021 bp 3 contigs ----isReversed: 1 ----hitSequence: CUGAUCAUAGCUUAAUGGUUAAAGCAAGAGAAUCAGGCUCUCUCUAUCUUGGUUCGAUUCCGAGUGGUCAGG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.444444 ----pairStats: 21,0,2,0 hit 330 : 44971 44900 (rev) 55.58 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 ::G: ::UAGCU:A+UGGU A:AGCA:::GA U + UC::: + +:: GGUUCGA+U 20051 CUGAUCAUAGCUUAAUGGUuAAAGCAAGAGAAUCAGGCUCUCUCUA-UCUUGGUUCGAUU 20109 >>>>>))))))): 60 CCcgccaucccCA 72 CC :::: :C:: 20110 CCGAGUGGUCAGG 20122 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #812,emb|8254823| 461832 bp 8 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 331 : 294807 294879 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 294807 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 294866 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 294867 CCCAGGUUCUCCA 294879 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 332 : 294664 294736 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 294664 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 294723 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 294724 CCCAGGUUCUCCA 294736 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 333 : 294514 294586 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 294514 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 294573 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 294574 CCCAGGUUCUCCA 294586 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 334 : 294367 294439 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 294367 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 294426 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 294427 CCCAGGUUCUCCA 294439 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 335 : 294225 294297 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 294225 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 294284 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 294285 CCCAGGUUCUCCA 294297 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 336 : 294080 294152 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 294080 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 294139 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 294140 CCCAGGUUCUCCA 294152 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 337 : 293936 294008 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 293936 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 293995 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 293996 CCCAGGUUCUCCA 294008 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 338 : 293795 293867 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 293795 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 293854 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 293855 CCCAGGUUCUCCA 293867 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #812,emb|8254823| 461832 bp 8 contigs ----isReversed: 1 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUUGACUCGAAAUCAACUGGGUUUACCCGCACAGGUUCAAAUCCUGUAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.493827 ----pairStats: 21,0,1,1 hit 339 : 391759 391679 (rev) 58.51 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G C:C 70074 GUCAGUUUGUCCGAGUGGUuAAGGAGGUUGACUCGAAAUCAACU-ggguuuacccG-CAC 70131 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUC+AAUCC:G::+::::C 70132 AGGUUCAAAUCCUGUAGCUGACG 70154 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #812,emb|8254823| 461832 bp 8 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 340 : 234281 234209 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 227552 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 227611 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 227612 CCCAGGUUCUCCA 227624 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 341 : 234435 234363 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 227398 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 227457 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 227458 CCCAGGUUCUCCA 227470 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 342 : 234584 234512 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 227249 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 227308 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 227309 CCCAGGUUCUCCA 227321 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #821,emb|8254826| 51850 bp 4 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 343 : 41007 40935 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 10844 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 10903 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 10904 CCCUCGGUGGGUG 10916 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #823,emb|8255629| 1032 bp 1 contigs ----isReversed: 0 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 344 : 285 357 (fwd) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 285 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 344 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 345 CCCUCCAUCCACA 357 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #823,emb|8255629| 1032 bp 1 contigs ----isReversed: 0 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 345 : 712 784 (fwd) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 712 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 771 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 772 CCCUCCAUCCACA 784 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #825,emb|8254827| 76041 bp 3 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 346 : 51382 51454 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 51382 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 51441 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 51442 CCCAGGUUCUCCA 51454 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #825,emb|8254827| 76041 bp 3 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 347 : 59157 59229 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 59157 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 59216 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 59217 CCCAGGUUCUCCA 59229 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #825,emb|8254827| 76041 bp 3 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 348 : 59382 59454 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 59382 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 59441 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 59442 CCCAGGUUCUCCA 59454 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #828,emb|8254828| 121186 bp 9 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 349 : 116993 116920 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 4194 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 4253 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 4254 CCCUACAUCGAGCG 4267 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #829,emb|8254682| 187078 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCCUCAUAGUCUAGCUGGUUAGGAUACAAGGUUCUCACCCUUGAGACCCGGGUUCAAGUCCCGGUGGGGGAG ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,3,0 hit 350 : 12027 12099 (fwd) 63.31 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::: ::UA::::AG GGU A::::A:::G:+U U A :C:::AG+ C:CGGGUUC+A 12027 UCCCUCAUAGUCUAGCuGGUuAGGAUACAAGGUUCUCACCCUUGAGA-CCCGGGUUCAAG 12085 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::: :::: 12086 UCCCGGUGGGGGAG 12099 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #829,emb|8254682| 187078 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 351 : 37942 38014 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 37942 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 38000 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 38001 UCCCGGUGGGGGAA 38014 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #833,emb|8254683| 27310 bp 2 contigs ----isReversed: 0 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 352 : 12495 12567 (fwd) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 12495 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 12554 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 12555 CCCUCGGUGGGUG 12567 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #833,emb|8254683| 27310 bp 2 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCUGUAGAGCUCCAGCCUUUUAAGCUGGUGGUAGAGGGUUAGAGCCCCUCGGUGCGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.575342 ----pairStats: 21,0,2,1 hit 353 : 19576 19504 (rev) 54.10 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :: : +:UAGCUCAGU GUAGAGC :C:G:CUUUUAA:C:G:+GGU G:GGGUU GA 7735 ACCCGUCUAGCUCAGUcUGUAGAGCUCCAGCCUUUUAAGCUGGUGGUAGAGGGUUAGAGC 7794 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ : :: 7795 CCCUCGGUGCGUG 7807 ----endhit ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 354 : 19794 19722 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 7517 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 7576 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 7577 CCCUCGGUGGGUG 7589 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #833,emb|8254683| 27310 bp 2 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGUUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.616438 ----pairStats: 21,0,3,0 hit 355 : 13916 13844 (rev) 68.98 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C: :CUUUUAA: :G:+GGUCG:GGGUUCGA 13395 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGUUGGUGGUCGAGGGUUCGAGC 13454 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 13455 CCCUCGGUGGGUG 13467 ----endhit ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 356 : 14170 14098 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 13141 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 13200 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 13201 CCCUCGGUGGGUG 13213 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GGAGACUUAGCUCAAUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAUUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.513889 ----pairStats: 21,0,2,0 hit 357 : 234435 234506 (fwd) 75.12 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G :GA::UAGCUCA+UGGUAGAGC+::GGACU +AAUCC:: GGU+:CG:GUUCGA+UC 234435 GGAGACUUAGCUCAAUGGUAGAGCGCUGGACUCCAAAUCCAGCGGUUGCGUGUUCGAUUC 234494 >>>>))))))): 61 CcgccaucccCA 72 :CG:::UC: CA 234495 ACGUAGUCUUCA 234506 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,2,0 hit 358 : 234733 234805 (fwd) 70.09 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+U:GGACU +AAUCC:A GGU+:CG:GUUCGA U 234733 GGAGACUUAGCUCAAGuGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGU 234792 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 234793 CACGUAGUCUUCA 234805 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GGAGACUUAGCUCAAAUGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.493151 ----pairStats: 21,0,2,0 hit 359 : 235242 235314 (fwd) 72.11 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+U:GGACU +AAUCC:A GGU+:CG:GUUCGA U 235242 GGAGACUUAGCUCAAAuGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGU 235301 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 235302 CACGUAGUCUUCA 235314 ----endhit ----hitSequence: GGAGACUUAGCUCAAAUGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGUCACAUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.479452 ----pairStats: 21,0,2,1 hit 360 : 235064 235136 (fwd) 64.49 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+U:GGACU +AAUCC:A GGU+: G:GUUCGA U 235064 GGAGACUUAGCUCAAAuGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGU 235123 >>>>>))))))): 60 CCcgccaucccCA 72 C:C :::UC: CA 235124 CACAUAGUCUUCA 235136 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,2,0 hit 361 : 235590 235662 (fwd) 70.09 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+U:GGACU +AAUCC:A GGU+:CG:GUUCGA U 235590 GGAGACUUAGCUCAAGuGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGU 235649 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 235650 CACGUAGUCUUCA 235662 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 1 ----hitSequence: GGAGACUUAGCUCAAGUGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGUCACGUAGUCUUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,2,0 hit 362 : 51479 51407 (rev) 70.09 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G :GA::UAGCUCA+ GGUAGAGC+U:GGACU +AAUCC:A GGU+:CG:GUUCGA U 490355 GGAGACUUAGCUCAAGuGGUAGAGCGUUGGACUCCAAAUCCAACGGUUGCGUGUUCGAGU 490414 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::UC: CA 490415 CACGUAGUCUUCA 490427 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #847,emb|8254688| 757561 bp 3 contigs ----isReversed: 0 ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 363 : 50000 50070 (fwd) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 50000 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 50058 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 50059 CCGGACGCAGCA 50070 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #848,emb|8253886| 149881 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 364 : 56566 56494 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 93316 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 93374 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 93375 UCCCGGUGGGGGAA 93388 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 365 : 90245 90316 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 90245 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 90303 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 90304 CCCGGUCUCGGAG 90316 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 366 : 101518 101589 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 101518 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 101576 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 101577 CCCGGUCUCGGAG 101589 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 367 : 539801 539872 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 539801 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 539859 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 539860 CCCAGUGGGACCU 539872 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 368 : 540130 540201 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 540130 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 540188 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 540189 CCCAGUGGGACCU 540201 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 369 : 540839 540910 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 540839 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 540897 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 540898 CCCAGUGGGACCU 540910 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUUCAUAGUAUAGUGCUUAGAACUGGGGACUUUAAAUCCUUUGACUUGGGUUCGAAUUCGAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.430556 ----pairStats: 21,0,7,2 hit 370 : 541206 541277 (fwd) 39.74 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: ::UAG: :AGUG U A: :C : GGACUUU+AAUCC :+G+ C : G UUCGAAU 541206 GGUUUCAUAGUAUAGUGCUuAGAACUGGGGACUUUAAAUCCUUUGA-CUUGGGUUCGAAU 541264 >>>>>))))))): 60 CCcgccaucccCA 72 C : :: :CC 541265 UCGAGUGGGACCU 541277 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGCAGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.5 ----pairStats: 21,0,3,0 hit 371 : 541560 541631 (fwd) 62.99 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AG GU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 541560 GGUUCCAUAGUAUAGCAGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 541618 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 541619 CCCAGUGGGACCU 541631 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 372 : 541833 541904 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 541833 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 541891 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 541892 CCCAGUGGGACCU 541904 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 373 : 542122 542193 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 542122 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 542180 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 542181 CCCAGUGGGACCU 542193 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUCAGUACUGGGGACUUUAAAUCCCUUGAUCUUAGUUCGAAUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))...............))))))). ----hitGC: 0.439394 ----pairStats: 21,5,3,0 hit 374 : 542629 542694 (fwd) 34.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+UC G UUCGAA 542629 GGUUCCAUAGUAUAGUGGUcAGUACUGGGGACUUUAAAUCCCUUGAUCUUAG-UUCGAA- 542686 >>>>>))))))): 60 CCcgccaucccCA 72 ::: :CC 542687 -----UGGGACCU 542694 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 375 : 543081 543152 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 543081 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 543139 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 543140 CCCAGUGGGACCU 543152 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 376 : 543333 543404 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 543333 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 543391 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 543392 CCCAGUGGGACCU 543404 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 377 : 544103 544174 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 544103 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 544161 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 544162 CCCAGUGGGACCU 544174 ----endhit ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 378 : 543824 543895 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 543824 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 543882 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 543883 CCCAGUGGGACCU 543895 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 379 : 544479 544550 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 544479 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 544537 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 544538 CCCAGUGGGACCU 544550 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 380 : 544945 545016 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 544945 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 545003 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 545004 CCCAGUGGGACCU 545016 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 381 : 581982 582053 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 581982 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 582040 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 582041 CCCAGUGGGACCU 582053 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 382 : 23037 22955 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 663128 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 663185 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 663186 GUGAGUUCGAAUCUCACAGUUGCCA 663210 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #884,emb|8253891| 330571 bp 5 contigs ----isReversed: 1 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 383 : 109608 109537 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 220964 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 221023 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 221024 CCACCUUGGUUG 221035 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #893,emb|8253894| 215179 bp 2 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 384 : 212311 212229 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 2869 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 2926 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 2927 GUGAGUUCGAAUCUCACAGUUGCCA 2951 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #893,emb|8253894| 215179 bp 2 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 385 : 53774 53691 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 161406 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 161465 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 161466 CCGGUUCGAACCCGGGAGUUCGGA 161489 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #902,emb|8253899| 65344 bp 2 contigs ----isReversed: 1 ----hitSequence: GUCGGCAUGGUGAAGCGGUAAUCACGAAGGUAUCACGAAGGUCUUAUGAACCUUAAUCCUAGGUUCAAACCCUAGUGUCGACG ----ssRNAplot: (((((((..((((...................)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.481928 ----pairStats: 21,0,1,0 hit 386 : 39320 39238 (rev) 42.45 bits (((((((,,<<<<______._...........>>>>,<<<<<_______>>>>>,,,,,< 1 GgggaugUAGCucAgUGGU.A...........gaGCaucgGaCUuuuAAuCcgaaGgUcg 48 G::G ::U+G:: AG GGU A ::C+::GG:CUU+U A:CC::A+ C: 26025 GUCGGCAUGGUGAAGCGGUaAucacgaagguaUCACGAAGGUCUUAUGAACCUUAAU-CC 26083 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 ::GGUUC+AA CC::::: C::C 26084 UAGGUUCAAACCCUAGUGUCGACG 26107 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 387 : 206410 206339 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 92538 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 92597 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 92598 CUCUCUCUGCUA 92609 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 388 : 126283 126211 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 172665 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 172724 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 172725 CUCGGAGGAAUCA 172737 ----endhit ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 389 : 126494 126422 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 172454 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 172513 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 172514 CUCGGAGGAAUCA 172526 ----endhit ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 390 : 126698 126626 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 172250 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 172309 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 172310 CUCGGAGGAAUCA 172322 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 391 : 126051 125979 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 172897 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 172956 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 172957 CUCGGAGGAAUCA 172969 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 392 : 125825 125753 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 173123 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 173182 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 173183 CUCGGAGGAAUCA 173195 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 393 : 125606 125534 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 173342 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 173401 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 173402 CUCGGAGGAAUCA 173414 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 394 : 125405 125333 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 173543 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 173602 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 173603 CUCGGAGGAAUCA 173615 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 395 : 125076 125004 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 173872 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 173931 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 173932 CUCGGAGGAAUCA 173944 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1027,emb|8254104| 298947 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 396 : 124856 124784 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 174092 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 174151 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 174152 CUCGGAGGAAUCA 174164 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1124,emb|8254314| 2591 bp 1 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 397 : 670 588 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 1922 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 1979 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 1980 GUGAGUUCGAAUCUCACAGUUGCCA 2004 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1152,emb|8254323| 1688 bp 1 contigs ----isReversed: 0 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCAAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.621951 ----pairStats: 21,0,2,1 hit 398 : 1337 1418 (fwd) 55.92 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 1337 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 1394 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+AAUC:C:CC+::::CA 1395 UGAGUUCAAAUCUCACCGCGUGCA 1418 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1152,emb|8254323| 1688 bp 1 contigs ----isReversed: 1 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 399 : 962 881 (rev) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 727 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 784 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 785 UGAGUUCGAAUCUCACCGCGUGCA 808 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1152,emb|8254323| 1688 bp 1 contigs ----isReversed: 1 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 400 : 707 626 (rev) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 982 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 1039 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 1040 UGAGUUCGAAUCUCACCGCGUGCA 1063 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1170,emb|8254187| 311280 bp 2 contigs ----isReversed: 0 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 401 : 180156 180239 (fwd) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 180156 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 180215 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 180216 CCGGUUCGAACCCGGGAGUUCGGA 180239 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1170,emb|8254187| 311280 bp 2 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 402 : 242452 242532 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 242452 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 242509 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 242510 AGGUUCGAAUCCUGCAGCUGACG 242532 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1170,emb|8254187| 311280 bp 2 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 403 : 242845 242925 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 242845 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 242902 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 242903 AGGUUCGAAUCCUGCAGCUGACG 242925 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1170,emb|8254187| 311280 bp 2 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 404 : 243183 243263 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 243183 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 243240 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 243241 AGGUUCGAAUCCUGCAGCUGACG 243263 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1170,emb|8254187| 311280 bp 2 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 405 : 243513 243593 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 243513 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 243570 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 243571 AGGUUCGAAUCCUGCAGCUGACG 243593 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1202,emb|8254199| 125916 bp 2 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 406 : 23864 23785 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 102053 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 102110 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 102111 AGUUCGAAUCUCGCCUUCAUCA 102132 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1213,emb|8255146| 1040 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 407 : 1001 929 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 40 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 99 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 100 CCCAGGUUCUCCA 112 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1280,emb|8254367| 262110 bp 1 contigs ----isReversed: 0 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 408 : 158839 158911 (fwd) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 158839 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 158898 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 158899 CUCGGAGGAAUCA 158911 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1280,emb|8254367| 262110 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCACUUUAGCUUAGUGAUUAGAGCAUUUGCCUAGUAAGCGAAAGGUCGAUGCUUUAAUCCUGCCAAGUUGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.438356 ----pairStats: 21,0,4,3 hit 409 : 166749 166677 (rev) 33.70 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G: ::U:UAGCU:AGUG U A:AGCAU: G:CU UAA:C :AAGGUCG UU +A+ 95362 GCCACUUUAGCUUAGUGAUuAGAGCAUUUGCCUAGUAAGCGAAAGGUCGAUGCUUUAAUC 95421 >>>>>))))))): 60 CCcgccaucccCA 72 C:A:: :C 95422 CUGCCAAGUUGCU 95434 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 410 : 166933 166861 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 95178 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 95237 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 95238 CCGCCAAGUGGCU 95250 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 411 : 167089 167017 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 95022 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 95081 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 95082 CCGCCAAGUGGCU 95094 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 412 : 167270 167198 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 94841 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 94900 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 94901 CCGCCAAGUGGCU 94913 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1280,emb|8254367| 262110 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 413 : 166390 166318 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 95721 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 95780 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 95781 CCGCCAAGUGGCU 95793 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 414 : 166566 166494 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 95545 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 95604 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 95605 CCGCCAAGUGGCU 95617 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1280,emb|8254367| 262110 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 415 : 165954 165882 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 96157 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 96216 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 96217 CCGCCAAGUGGCU 96229 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 416 : 166123 166051 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 95988 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 96047 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 96048 CCGCCAAGUGGCU 96060 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1280,emb|8254367| 262110 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 417 : 165684 165612 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 96427 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 96486 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 96487 CCGCCAAGUGGCU 96499 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1280,emb|8254367| 262110 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 418 : 164503 164431 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 97608 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 97667 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 97668 CCGCCAAGUGGCU 97680 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 419 : 164708 164636 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 97403 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 97462 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 97463 CCGCCAAGUGGCU 97475 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 420 : 164923 164851 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 97188 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 97247 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 97248 CCGCCAAGUGGCU 97260 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 421 : 165147 165075 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 96964 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 97023 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 97024 CCGCCAAGUGGCU 97036 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 422 : 165364 165292 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 96747 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 96806 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 96807 CCGCCAAGUGGCU 96819 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1282,emb|8254369| 157825 bp 1 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 423 : 96854 96775 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 60972 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 61029 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 61030 AGUUCGAAUCUCGCCUUCAUCA 61051 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1292,emb|8254513| 64538 bp 1 contigs ----isReversed: 0 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 424 : 1983 2065 (fwd) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 1983 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 2040 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 2041 GUGAGUUCGAAUCUCACAGUUGCCA 2065 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1292,emb|8254513| 64538 bp 1 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 425 : 16098 16025 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 48441 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 48500 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 48501 CCCUACAUCGAGCG 48514 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1292,emb|8254513| 64538 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 426 : 3001 2930 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 61538 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 61597 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 61598 CCACCUUGGUUG 61609 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1292,emb|8254513| 64538 bp 1 contigs ----isReversed: 1 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 427 : 2187 2116 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 62352 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 62411 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 62412 CCACCUUGGUUG 62423 ----endhit ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 428 : 2373 2302 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 62166 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 62225 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 62226 CCACCUUGGUUG 62237 ----endhit ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 429 : 2572 2501 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 61967 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 62026 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 62027 CCACCUUGGUUG 62038 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1298,emb|8254515| 276251 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 430 : 258464 258392 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 17788 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 17847 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 17848 CCCACGGCGGGCU 17860 ----endhit ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 431 : 258676 258604 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 17576 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 17635 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 17636 CCCACGGCGGGCU 17648 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1305,emb|8254371| 530472 bp 4 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 432 : 93492 93564 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 93492 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 93551 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 93552 CCCACGGCGGGCU 93564 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1305,emb|8254371| 530472 bp 4 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 433 : 93807 93879 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 93807 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 93866 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 93867 CCCACGGCGGGCU 93879 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1305,emb|8254371| 530472 bp 4 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 434 : 94118 94190 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 94118 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 94177 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 94178 CCCACGGCGGGCU 94190 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1305,emb|8254371| 530472 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 435 : 316605 316678 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 316605 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 316664 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 316665 CCCUACAUCGAGCG 316678 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 0 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 436 : 262355 262428 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 262355 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 262414 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 262415 CCCCUCCGCAGGCA 262428 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 437 : 428621 428694 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 428621 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 428680 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 428681 CCCUACAUCGAGCG 428694 ----endhit ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 438 : 428392 428465 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 428392 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 428451 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 428452 CCCUACAUCGAGCG 428465 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 439 : 651287 651368 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 651287 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 651344 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 651345 UGAGUUCAAUUCUCACAGGUGUCG 651368 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 1 ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 440 : 130853 130783 (rev) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 744867 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 744925 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 744926 CCGGACGCAGCA 744937 ----endhit ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 441 : 131014 130944 (rev) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 744706 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 744764 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 744765 CCGGACGCAGCA 744776 ----endhit ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 442 : 131171 131101 (rev) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 744549 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 744607 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 744608 CCGGACGCAGCA 744619 ----endhit ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 443 : 131335 131265 (rev) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 744385 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 744443 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 744444 CCGGACGCAGCA 744455 ----endhit ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 444 : 131494 131424 (rev) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 744226 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 744284 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 744285 CCGGACGCAGCA 744296 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1311,emb|8254373| 875719 bp 4 contigs ----isReversed: 1 ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGA ----ssRNAplot: ......(..((((.......)))).(((((.......)))))....(((((.......)))))) ----hitGC: 0.5625 ----pairStats: 21,6,3,0 hit 445 : 130540 130477 (rev) 38.19 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G++G++:U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 745180 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 745238 >>>>))))))): 61 CcgccaucccCA 72 CCG : 745239 CCGGA------- 745243 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1320,emb|8254377| 298147 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 446 : 121792 121720 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 176356 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 176415 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 176416 CCGAGUGAAGGCA 176428 ----endhit ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 447 : 121986 121914 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 176162 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 176221 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 176222 CCGAGUGAAGGCA 176234 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 0 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 448 : 715915 715986 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 715915 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 715974 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 715975 CCACCUUGGUUG 715986 ----endhit ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 449 : 715762 715833 (fwd) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 715762 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 715821 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 715822 CCACCUUGGUUG 715833 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 450 : 716155 716084 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 41001 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 41060 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 41061 CCACCUUGGUUG 41072 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUCCCACCUUGGUUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,2,1 hit 451 : 715537 715466 (rev) 71.21 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 : :: :GU+GC:CA+UGGUAG:GCA C:GACUU UAAUC:G AGGU+G:GGGUUCGA UC 41619 AGCCGAGUGGCGCAAUGGUAGCGCAGCAGACUUCUAAUCUGAAGGUUGUGGGUUCGAGUC 41678 >>>>))))))): 61 CcgccaucccCA 72 CC:CC: :: : 41679 CCACCUUGGUUG 41690 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 452 : 196531 196460 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 560625 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 560684 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 560685 UCGGACGACCCC 560696 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 453 : 196368 196297 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 560788 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 560847 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 560848 UCGGACGACCCC 560859 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 454 : 196009 195938 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 561147 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 561206 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 561207 UCGGACGACCCC 561218 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 455 : 195829 195758 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 561327 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 561386 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 561387 UCGGACGACCCC 561398 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 456 : 195617 195546 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 561539 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 561598 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 561599 UCGGACGACCCC 561610 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 457 : 195439 195368 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 561717 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 561776 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 561777 UCGGACGACCCC 561788 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1322,emb|8254379| 757155 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 458 : 195097 195026 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 562059 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 562118 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 562119 UCGGACGACCCC 562130 ----endhit ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 459 : 195267 195196 (rev) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 561889 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 561948 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 561949 UCGGACGACCCC 561960 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1346,emb|8254527| 520468 bp 1 contigs ----isReversed: 0 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 460 : 131128 131198 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 131128 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 131186 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 131187 CCGGUCGGUGCA 131198 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1351,emb|8254383| 65305 bp 3 contigs ----isReversed: 0 ----hitSequence: GACACUUUGGCCGAGUGGUUAAGGCGGCGGCCUGCUAAGCCGUUUCCCUCUGGGAGCGUGAGUUCAAUUCUCACAGGUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.585366 ----pairStats: 21,0,2,1 hit 461 : 10183 10264 (fwd) 62.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::+:U+GC::AGUGGU A::GC+:CGG:CU+ UAA:CCG:+ G CG 10183 GACACUUUGGCCGAGUGGUuAAGGCGGCGGCCUGCUAAGCCGUU-ucccucugggaG-CG 10240 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C:+::::C 10241 UGAGUUCAAUUCUCACAGGUGUCG 10264 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1356,emb|8254385| 477791 bp 2 contigs ----isReversed: 0 ----hitSequence: GCAUCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGAUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.535211 ----pairStats: 21,0,3,0 hit 462 : 221147 221217 (fwd) 67.89 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 221147 GCAUCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 221205 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 221206 CCGGUCGAUGCA 221217 ----endhit ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 463 : 221004 221074 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 221004 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 221062 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 221063 CCGGUCGGUGCA 221074 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1356,emb|8254385| 477791 bp 2 contigs ----isReversed: 1 ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 464 : 60937 60867 (rev) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 416855 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 416913 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 416914 CCGGACGCAGCA 416925 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1356,emb|8254385| 477791 bp 2 contigs ----isReversed: 1 ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 465 : 60670 60600 (rev) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 417122 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 417180 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 417181 CCGGACGCAGCA 417192 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1362,emb|8254389| 153406 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 466 : 5813 5743 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 147594 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 147652 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 147653 CCGGUCGGUGCA 147664 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1385,emb|8254391| 308699 bp 1 contigs ----isReversed: 0 ----hitSequence: GUCAGUUUGUCCGAGUGGUUAAGGAGGUGGACUUGAAAUCCAUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGCUGACG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 467 : 286910 286990 (fwd) 61.01 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G::::+:U+:C::AGUGGU A::G:+::GGACUU +AAUCC::+ G CGC 286910 GUCAGUUUGUCCGAGUGGUuAAGGAGGUGGACUUGAAAUCCAUU-ggguuuacccG-CGC 286967 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+::::C 286968 AGGUUCGAAUCCUGCAGCUGACG 286990 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1388,emb|8254392| 82778 bp 1 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 468 : 45072 45001 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 37707 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 37765 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 37766 CCCGGUCUCGGAG 37778 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1388,emb|8254392| 82778 bp 1 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 469 : 42156 42086 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 40623 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 40681 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 40682 CCGGUCGGUGCA 40693 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1388,emb|8254392| 82778 bp 1 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 470 : 37079 37009 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 45700 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 45758 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 45759 CCGGUCGGUGCA 45770 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1396,emb|8254395| 541259 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 471 : 361830 361903 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 361830 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 361889 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 361890 CCCUACAUCGAGCG 361903 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1398,emb|8254396| 98811 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCUGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.597222 ----pairStats: 21,0,4,0 hit 472 : 88891 88820 (rev) 65.73 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC: GUUC+A+ C 9921 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 9980 >>>>))))))): 61 CcgccaucccCA 72 :GC:+: CCC 9981 UGGCAGGUCCCU 9992 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 473 : 58205 58277 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 58205 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 58263 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 58264 UCCCGGUGGGGGAA 58277 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 474 : 58452 58524 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 58452 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 58510 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 58511 UCCCGGUGGGGGAA 58524 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 0 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 475 : 61228 61301 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 61228 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 61287 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 61288 CCCCUCCGCAGGCA 61301 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 476 : 141672 141744 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 141672 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 141731 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 141732 CCCACGGCGGGCU 141744 ----endhit ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 477 : 141393 141465 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 141393 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 141452 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 141453 CCCACGGCGGGCU 141465 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1400,emb|8254397| 230559 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 478 : 49846 49774 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 180714 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 180773 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 180774 CCGAGUGAAGGCA 180786 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1416,emb|8254545| 1045189 bp 3 contigs ----isReversed: 0 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 479 : 777539 777611 (fwd) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 777539 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 777598 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 777599 CCGCCAAGUGGCU 777611 ----endhit ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 480 : 777282 777354 (fwd) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 777282 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 777341 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 777342 CCGCCAAGUGGCU 777354 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1416,emb|8254545| 1045189 bp 3 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 481 : 924263 924191 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 120927 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 120986 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 120987 CCGAGUGAAGGCA 120999 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1416,emb|8254545| 1045189 bp 3 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 482 : 794795 794723 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 250395 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 250454 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 250455 CUCGGAGGAAUCA 250467 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1420,emb|8254547| 25925 bp 2 contigs ----isReversed: 0 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 483 : 430 500 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 430 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 488 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 489 CCGGUCGGUGCA 500 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1420,emb|8254547| 25925 bp 2 contigs ----isReversed: 0 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 484 : 889 959 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 889 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 947 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 948 CCGGUCGGUGCA 959 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCCCCGGAUUGCCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,1 hit 485 : 326822 326751 (rev) 61.41 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG:A::U+::::AGUGGUA:::: :::G:+UU :C:::AGGUC:CGGGUUC+A+ C 387337 GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCC 387396 >>>>))))))): 61 CcgccaucccCA 72 CCG:::U:CCC 387397 CCGGAUUGCCCC 387408 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCCCCGGAUUGCCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,1 hit 486 : 326610 326539 (rev) 61.41 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG:A::U+::::AGUGGUA:::: :::G:+UU :C:::AGGUC:CGGGUUC+A+ C 387549 GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCC 387608 >>>>))))))): 61 CcgccaucccCA 72 CCG:::U:CCC 387609 CCGGAUUGCCCC 387620 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCCCCGGAUUGCCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,1 hit 487 : 326398 326327 (rev) 61.41 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG:A::U+::::AGUGGUA:::: :::G:+UU :C:::AGGUC:CGGGUUC+A+ C 387761 GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCC 387820 >>>>))))))): 61 CcgccaucccCA 72 CCG:::U:CCC 387821 CCGGAUUGCCCC 387832 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCCCCGGAUUGCCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,1 hit 488 : 325652 325581 (rev) 61.41 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG:A::U+::::AGUGGUA:::: :::G:+UU :C:::AGGUC:CGGGUUC+A+ C 388507 GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCC 388566 >>>>))))))): 61 CcgccaucccCA 72 CCG:::U:CCC 388567 CCGGAUUGCCCC 388578 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAUUAGGUAGGAUUCUCGUCUCCAAUUCGAGAGAUCCAGGUUCGAUUCCUGGAUUGCCCC ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.5 ----pairStats: 21,0,2,1 hit 489 : 324634 324563 (rev) 58.51 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GGG:A::U+::::A U GGUA:::: :::G CU +A C:::AG+ +:C:GGUUCGA+U 389525 GGGCAAUUGGUCUAUUaGGUAGGAUUCUCGUCUCCAAUUCGAGAGA-UCCAGGUUCGAUU 389583 >>>>>))))))): 60 CCcgccaucccCA 72 CC:G:::U:CCC 389584 CCUGGAUUGCCCC 389596 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAUUAGGUAGGAUUCUCGUCUCCAGAGCGAGAGAUCCAGGUUCGAUUCCUGGAUUGCCCC ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,3,0 hit 490 : 324255 324184 (rev) 60.52 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GGG:A::U+::::A U GGUA:::: :::G CU + A C:::AG+ +:C:GGUUCGA+U 389904 GGGCAAUUGGUCUAUUaGGUAGGAUUCUCGUCUCCAGAGCGAGAGA-UCCAGGUUCGAUU 389962 >>>>>))))))): 60 CCcgccaucccCA 72 CC:G:::U:CCC 389963 CCUGGAUUGCCCC 389975 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAUCAGGUAGGAUUCUCGUCUCCAAAUCGAGAGAUCCAGGUUCGAUUCCUGGAUUGCCCC ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.513889 ----pairStats: 21,0,2,1 hit 491 : 323860 323789 (rev) 59.26 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GGG:A::U+::::A GGUA:::: :::G CU +AA C:::AG+ +:C:GGUUCGA+U 390299 GGGCAAUUGGUCUAUCaGGUAGGAUUCUCGUCUCCAAAUCGAGAGA-UCCAGGUUCGAUU 390357 >>>>>))))))): 60 CCcgccaucccCA 72 CC:G:::U:CCC 390358 CCUGGAUUGCCCC 390370 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAUCAGGUAGGAUUCUCGUUUCCAAAUCGAGAGAUCCAGGUUCAAUUCCUGGAUUGCCCC ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,2,1 hit 492 : 323484 323413 (rev) 58.52 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GGG:A::U+::::A GGUA:::: :::G +U +AA C:::AG+ +:C:GGUUC+A+U 390675 GGGCAAUUGGUCUAUCaGGUAGGAUUCUCGUUUCCAAAUCGAGAGA-UCCAGGUUCAAUU 390733 >>>>>))))))): 60 CCcgccaucccCA 72 CC:G:::U:CCC 390734 CCUGGAUUGCCCC 390746 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAUCAGGUAGGAUUCUCGUCUCCAAAUCGAGAGAUCCAGGUUCGAUUCCUGGAUUGCCCC ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.513889 ----pairStats: 21,0,2,1 hit 493 : 323150 323079 (rev) 59.26 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GGG:A::U+::::A GGUA:::: :::G CU +AA C:::AG+ +:C:GGUUCGA+U 391009 GGGCAAUUGGUCUAUCaGGUAGGAUUCUCGUCUCCAAAUCGAGAGA-UCCAGGUUCGAUU 391067 >>>>>))))))): 60 CCcgccaucccCA 72 CC:G:::U:CCC 391068 CCUGGAUUGCCCC 391080 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCCCCGGAUUGCCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,1 hit 494 : 322407 322336 (rev) 61.41 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG:A::U+::::AGUGGUA:::: :::G:+UU :C:::AGGUC:CGGGUUC+A+ C 391752 GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCC 391811 >>>>))))))): 61 CcgccaucccCA 72 CCG:::U:CCC 391812 CCGGAUUGCCCC 391823 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1421,emb|8254548| 714158 bp 3 contigs ----isReversed: 1 ----hitSequence: GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCCCCGGAUUGCCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.555556 ----pairStats: 21,0,1,1 hit 495 : 322114 322043 (rev) 61.41 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG:A::U+::::AGUGGUA:::: :::G:+UU :C:::AGGUC:CGGGUUC+A+ C 392045 GGGCAAUUGGUCUAGUGGUAUGAUUCUCGUUUUGGGUACGAGAGGUCCCGGGUUCAAUCC 392104 >>>>))))))): 61 CcgccaucccCA 72 CCG:::U:CCC 392105 CCGGAUUGCCCC 392116 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1422,emb|8254549| 250927 bp 4 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 496 : 215783 215855 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 215783 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 215842 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 215843 CCCACGGCGGGCU 215855 ----endhit ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 497 : 215583 215655 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 215583 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 215642 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 215643 CCCACGGCGGGCU 215655 ----endhit ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 498 : 215363 215435 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 215363 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 215422 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 215423 CCCACGGCGGGCU 215435 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 0 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 499 : 193059 193132 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 193059 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 193118 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 193119 CCCCUCCCGGAGCA 193132 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 0 ----hitSequence: GCUCAGGUAGCUCAGUUGGUUAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGACCCCCACCUUGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.567568 ----pairStats: 21,0,2,0 hit 500 : 502446 502519 (fwd) 73.46 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:::A GUAGCUCAGU GGU AGAGC+U:GG CUU+U A CC:A GGUCG:GGGUUCGA 502446 GCUCAGGUAGCUCAGUuGGUuAGAGCGUUGGUCUUAUGAGCCAACGGUCGUGGGUUCGAC 502505 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC U:::CA 502506 CCCCACCUUGAGCA 502519 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: UCCCUCAUAGUCUAGCUGGUUAGGAUACAAGGUUCUCACCCUUGAGACCCGGGUUCAAGUCCCGGUGGGGGAG ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,3,0 hit 501 : 694594 694522 (rev) 63.31 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::: ::UA::::AG GGU A::::A:::G:+U U A :C:::AG+ C:CGGGUUC+A 24020 UCCCUCAUAGUCUAGCuGGUuAGGAUACAAGGUUCUCACCCUUGAGA-CCCGGGUUCAAG 24078 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::: :::: 24079 UCCCGGUGGGGGAG 24092 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: UCCCUCAUAGUCUAGCUGGUUAGGAUACAAGGUUCUCACCCUUGAGACCCGGGUUCAAGUCCCGGUGGGGGAG ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,3,0 hit 502 : 694191 694119 (rev) 63.31 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::: ::UA::::AG GGU A::::A:::G:+U U A :C:::AG+ C:CGGGUUC+A 24423 UCCCUCAUAGUCUAGCuGGUuAGGAUACAAGGUUCUCACCCUUGAGA-CCCGGGUUCAAG 24481 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::: :::: 24482 UCCCGGUGGGGGAG 24495 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: UCCCUCAUAGUCUAGCUGGUUAGGAUACAAGGUUCUCACCCUUGAGACCCGGGUUCAAGUCCCGGUGGGGGAG ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,3,0 hit 503 : 693618 693546 (rev) 63.31 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::: ::UA::::AG GGU A::::A:::G:+U U A :C:::AG+ C:CGGGUUC+A 24996 UCCCUCAUAGUCUAGCuGGUuAGGAUACAAGGUUCUCACCCUUGAGA-CCCGGGUUCAAG 25054 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::: :::: 25055 UCCCGGUGGGGGAG 25068 ----endhit ----hitSequence: UCCCUCAUAGUCUAGCUGGUUAGGAUACAAGGUUCUCACCCUUGAGACCCGGGUUCAAGUCCCGGUGGGGGAG ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,3,0 hit 504 : 693775 693703 (rev) 63.31 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::: ::UA::::AG GGU A::::A:::G:+U U A :C:::AG+ C:CGGGUUC+A 24839 UCCCUCAUAGUCUAGCuGGUuAGGAUACAAGGUUCUCACCCUUGAGA-CCCGGGUUCAAG 24897 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::: :::: 24898 UCCCGGUGGGGGAG 24911 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: UCCCUCAUAGUCUAGCUGGUUAGGAUACAAGGUUCUCACCCUUGAGACCCGGGUUCAAGUCCCGGUGGGGGAG ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,3,0 hit 505 : 619994 619922 (rev) 63.31 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::: ::UA::::AG GGU A::::A:::G:+U U A :C:::AG+ C:CGGGUUC+A 98620 UCCCUCAUAGUCUAGCuGGUuAGGAUACAAGGUUCUCACCCUUGAGA-CCCGGGUUCAAG 98678 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::: :::: 98679 UCCCGGUGGGGGAG 98692 ----endhit ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 506 : 620145 620072 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 98469 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 98528 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 98529 CCCUACAUCGAGCG 98542 ----endhit ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 507 : 620302 620229 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 98312 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 98371 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 98372 CCCUACAUCGAGCG 98385 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 508 : 195964 195891 (rev) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 522650 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 522709 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 522710 CCCCUCCCGGAGCA 522723 ----endhit ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 509 : 196191 196118 (rev) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 522423 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 522482 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 522483 CCCCUCCCGGAGCA 522496 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 510 : 195672 195599 (rev) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 522942 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 523001 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 523002 CCCCUCCCGGAGCA 523015 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 511 : 192461 192388 (rev) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 526153 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 526212 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 526213 CCCCUCCCGGAGCA 526226 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1428,emb|8254551| 718613 bp 7 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 512 : 54250 54178 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 664364 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 664422 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 664423 UCCCGGUGGGGGAA 664436 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1465,emb|8253904| 274829 bp 2 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 513 : 177447 177375 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 97383 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 97442 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 97443 CCCAGGUUCUCCA 97455 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1472,emb|8254707| 196396 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 514 : 107660 107731 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 107660 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 107718 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 107719 CCCGGUCUCGGAG 107731 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1472,emb|8254707| 196396 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 515 : 123581 123652 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 123581 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 123639 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 123640 CCCGGUCUCGGAG 123652 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1472,emb|8254707| 196396 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 516 : 133522 133593 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 133522 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 133580 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 133581 CCCGGUCUCGGAG 133593 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1472,emb|8254707| 196396 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 517 : 171867 171796 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 24530 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 24589 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 24590 CGGCAGGUCCCU 24601 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 518 : 172017 171946 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 24380 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 24439 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 24440 CGGCAGGUCCCU 24451 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 519 : 172169 172098 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 24228 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 24287 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 24288 CGGCAGGUCCCU 24299 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 520 : 172319 172248 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 24078 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 24137 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 24138 CGGCAGGUCCCU 24149 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 521 : 172470 172399 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 23927 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 23986 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 23987 CGGCAGGUCCCU 23998 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 522 : 172617 172546 (rev) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 23780 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 23839 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 23840 CGGCAGGUCCCU 23851 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCUGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.597222 ----pairStats: 21,0,4,0 hit 523 : 172770 172699 (rev) 65.73 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC: GUUC+A+ C 23627 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 23686 >>>>))))))): 61 CcgccaucccCA 72 :GC:+: CCC 23687 UGGCAGGUCCCU 23698 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1472,emb|8254707| 196396 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCUGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.597222 ----pairStats: 21,0,4,0 hit 524 : 167049 166978 (rev) 65.73 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC: GUUC+A+ C 29348 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 29407 >>>>))))))): 61 CcgccaucccCA 72 :GC:+: CCC 29408 UGGCAGGUCCCU 29419 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 0 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 525 : 275 346 (fwd) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 275 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 333 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 334 CCCAGUACGACCU 346 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 0 ----hitSequence: GACAAUAUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCUGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 526 : 53549 53629 (fwd) 58.30 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 53549 GACAAUAUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 53606 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 53607 AGGUUCGAAUCCUGCUGUUGUCG 53629 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 0 ----hitSequence: GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGGCUCGGGUUCGAUUCCCGGACGCAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.577465 ----pairStats: 21,0,3,0 hit 527 : 146013 146083 (fwd) 64.68 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::G:::U+::::AGUGG A:::: :::G:CUU AA:C::: GG C CGGGUUCGA+UC 146013 GCUGCGUUGGUCUAGUGGCAGGAUUAUUGCCUUCCAAGCAAUCGG-CUCGGGUUCGAUUC 146071 >>>>))))))): 61 CcgccaucccCA 72 CCG :::C::CA 146072 CCGGACGCAGCA 146083 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 0 ----hitSequence: GCUACAUUAAUCUAGUGGUAUGAUAAUUGCCUCCCACGCAAUAAGCUCGGGUUCGAUUCCCGAAUGUAGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.450704 ----pairStats: 21,0,0,1 hit 528 : 146762 146832 (fwd) 67.76 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::UA::::AGUGGUA::::A:::G:CU A :C:::A+G C:CGGGUUCGA+UC 146762 GCUACAUUAAUCUAGUGGUAUGAUAAUUGCCUCCCACGCAAUAAG-CUCGGGUUCGAUUC 146820 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 146821 CCGAAUGUAGCA 146832 ----endhit ----hitSequence: GCAGCGUUGGUCUAAUGGUAAGAUAAUUGCCUUCCAAGCAAUAGACUCGGGUUCGAUUCCCGGACGUUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.492958 ----pairStats: 21,0,3,0 hit 529 : 146487 146557 (fwd) 69.15 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G:: :::U+::::A+UGGUA::::A:::G:CUU AA:C:::AG+ C CGGGUUCGA+UC 146487 GCAGCGUUGGUCUAAUGGUAAGAUAAUUGCCUUCCAAGCAAUAGA-CUCGGGUUCGAUUC 146545 >>>>))))))): 61 CcgccaucccCA 72 CCG ::: ::CA 146546 CCGGACGUUGCA 146557 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 1 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 530 : 1497 1426 (rev) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 394568 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 394626 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 394627 CCCAGUACGACCU 394639 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 1 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 531 : 1247 1176 (rev) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 394818 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 394876 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 394877 CCCAGUACGACCU 394889 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 1 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 532 : 729 658 (rev) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 395336 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 395394 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 395395 CCCAGUACGACCU 395407 ----endhit ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 533 : 973 902 (rev) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 395092 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 395150 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 395151 CCCAGUACGACCU 395163 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1482,emb|8253908| 195107 bp 8 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 534 : 26826 26755 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 168282 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 168340 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 168341 CCCAGUGGGACCU 168353 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1483,emb|8254564| 889818 bp 4 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 535 : 643590 643520 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 246229 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 246287 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 246288 CCGGUCGGUGCA 246299 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1486,emb|8254565| 526763 bp 1 contigs ----isReversed: 0 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 536 : 258139 258220 (fwd) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 258139 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 258196 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 258197 UGAGUUCGAAUCUCACCGCGUGCA 258220 ----endhit ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 537 : 257975 258056 (fwd) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 257975 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 258032 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 258033 UGAGUUCGAAUCUCACCGCGUGCA 258056 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1486,emb|8254565| 526763 bp 1 contigs ----isReversed: 0 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 538 : 296700 296772 (fwd) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 296700 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 296759 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 296760 CCGAGUGAAGGCA 296772 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1486,emb|8254565| 526763 bp 1 contigs ----isReversed: 1 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 539 : 369847 369774 (rev) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 156917 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 156976 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 156977 CCCCUCCGCAGGCA 156990 ----endhit ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 540 : 369994 369921 (rev) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 156770 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 156829 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 156830 CCCCUCCGCAGGCA 156843 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1486,emb|8254565| 526763 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 541 : 269616 269544 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 257148 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 257207 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 257208 CCCAGGUUCUCCA 257220 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 542 : 17519 17590 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 17519 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 17578 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 17579 UCGGACGACCCC 17590 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 543 : 17682 17753 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 17682 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 17741 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 17742 UCGGACGACCCC 17753 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 544 : 17825 17896 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 17825 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 17884 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 17885 UCGGACGACCCC 17896 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 545 : 18095 18166 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 18095 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 18154 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 18155 UCGGACGACCCC 18166 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 546 : 18412 18483 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 18412 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 18471 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 18472 UCGGACGACCCC 18483 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 547 : 39056 39136 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 39056 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 39113 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 39114 AGGUUCGAAUCCUGCAGUUGUCG 39136 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 548 : 39281 39361 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 39281 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 39338 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 39339 AGGUUCGAAUCCUGCAGUUGUCG 39361 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 549 : 39479 39559 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 39479 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 39536 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 39537 AGGUUCGAAUCCUGCAGUUGUCG 39559 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 550 : 39690 39770 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 39690 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 39747 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 39748 AGGUUCGAAUCCUGCAGUUGUCG 39770 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 551 : 40453 40533 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 40453 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 40510 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 40511 AGGUUCGAAUCCUGCAGUUGUCG 40533 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 552 : 40720 40793 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 40720 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 40779 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 40780 CCCUACAUCGAGCG 40793 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 553 : 92562 92633 (fwd) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 92562 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 92620 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 92621 CCCAGUACGACCU 92633 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1498,emb|8254711| 128752 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 554 : 92769 92840 (fwd) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 92769 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 92827 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 92828 CCCAGUACGACCU 92840 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1501,emb|8254712| 240713 bp 5 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 555 : 68372 68299 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 172342 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 172401 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 172402 CCCUACAUCGAGCG 172415 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 0 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 556 : 1183080 1183163 (fwd) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 1183080 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 1183139 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 1183140 CCGGUUCGAACCCGGGAGUUCGGA 1183163 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 557 : 1015294 1015222 (rev) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 176636 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 176695 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 176696 CCCUCCAUCCACA 176708 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 558 : 1015037 1014965 (rev) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 176893 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 176952 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 176953 CCCUCCAUCCACA 176965 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 559 : 1014719 1014647 (rev) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 177211 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 177270 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 177271 CCCUCCAUCCACA 177283 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 560 : 1014293 1014221 (rev) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 177637 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 177696 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 177697 CCCUCCAUCCACA 177709 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 561 : 1014033 1013961 (rev) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 177897 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 177956 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 177957 CCCUCCAUCCACA 177969 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GUGGAUGUAGCUCAAUCGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAACCCUCCAUCCACA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.506849 ----pairStats: 21,0,1,0 hit 562 : 1013693 1013621 (rev) 65.01 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:GGAUGUAGCUCA+U GG AGAGC+ ::GA+U+U UC:: AGGU G:GGG UCGAA 178237 GUGGAUGUAGCUCAAUcGGAAGAGCGUAAGAUUGUGGCUCUUGAGGUAGAGGGAUCGAAA 178296 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:CCAUCC:CA 178297 CCCUCCAUCCACA 178309 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 563 : 1011168 1011096 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 180762 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 180821 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 180822 CCCUCGGUGGGUG 180834 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 564 : 790913 790841 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 401017 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 401076 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 401077 CCGAGUGAAGGCA 401089 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 565 : 790520 790448 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 401410 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 401469 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 401470 CCGAGUGAAGGCA 401482 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 566 : 160781 160710 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 1031149 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 1031208 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 1031209 CUCUCUCUGCUA 1031220 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGGCGGAGGAUCGAAGCCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,0 hit 567 : 156213 156142 (rev) 54.11 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGG C:::GG UCGAA C 1035717 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGGCGGAGGAUCGAAGC 1035776 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 1035777 CUCUCUCUGCUA 1035788 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 568 : 152216 152145 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 1039714 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 1039773 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 1039774 CUCUCUCUGCUA 1039785 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 569 : 142977 142906 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 1048953 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 1049012 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 1049013 CUCUCUCUGCUA 1049024 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 570 : 134900 134829 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 1057030 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 1057089 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 1057090 CUCUCUCUGCUA 1057101 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1517,emb|8254716| 1191929 bp 10 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 571 : 32793 32721 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 1159137 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 1159195 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 1159196 UCCCGGUGGGGGAA 1159209 ----endhit ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 572 : 32941 32869 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 1158989 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 1159047 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 1159048 UCCCGGUGGGGGAA 1159061 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1521,emb|8254571| 243475 bp 4 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 573 : 79016 78944 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 164460 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 164518 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 164519 UCCCGGUGGGGGAA 164532 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1521,emb|8254571| 243475 bp 4 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 574 : 77911 77839 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 165565 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 165623 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 165624 UCCCGGUGGGGGAA 165637 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1521,emb|8254571| 243475 bp 4 contigs ----isReversed: 1 ----hitSequence: AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAACCUCUCUCUGCUA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,3,0 hit 575 : 26417 26346 (rev) 60.00 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :G::: GU+GC: AGUGG A :GC+U:G :CU +UAA: C:AAGGUC:::GG UCGAA C 217059 AGCAGGGUGGCGAAGUGGAAUCGCGUUGGGCUCAUAACUCAAAGGUCGGAGGAUCGAAAC 217118 >>>>))))))): 61 CcgccaucccCA 72 C:::C :::C:A 217119 CUCUCUCUGCUA 217130 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1526,emb|8254718| 235511 bp 4 contigs ----isReversed: 1 ----hitSequence: GAUGGCGUGCCUGAGUGGUCAAAGGGAUAAGCGAAGGGCUUGUUGCUCAAAAGCAUGUGGGUUCGAUUCCCAUCGCCAUUA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.518519 ----pairStats: 21,0,3,1 hit 576 : 223254 223174 (rev) 37.37 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 :::G::GU+:CU:AGUGGU A:AG:+: :::C + ::: :+ + +:: 12258 GAUGGCGUGCCUGAGUGGUcAAAGGGAUAAGCGAAGGGCUUGUU-gcucaaaagcA-UGU 12315 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 GGGUUCGA+UCCC::C::C:::A 12316 GGGUUCGAUUCCCAUCGCCAUUA 12338 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1526,emb|8254718| 235511 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 577 : 130776 130694 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 104736 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 104793 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 104794 GUGAGUUCGAAUCUCACAGUUGCCA 104818 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1526,emb|8254718| 235511 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 578 : 107430 107348 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 128082 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 128139 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 128140 GUGAGUUCGAAUCUCACAGUUGCCA 128164 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1530,emb|8254719| 598405 bp 5 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 579 : 460036 460109 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 460036 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 460095 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 460096 CCCUACAUCGAGCG 460109 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1530,emb|8254719| 598405 bp 5 contigs ----isReversed: 1 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 580 : 318631 318550 (rev) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 279775 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 279832 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 279833 UGAGUUCGAAUCUCACCGCGUGCA 279856 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1530,emb|8254719| 598405 bp 5 contigs ----isReversed: 1 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 581 : 318384 318303 (rev) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 280022 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 280079 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 280080 UGAGUUCGAAUCUCACCGCGUGCA 280103 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1530,emb|8254719| 598405 bp 5 contigs ----isReversed: 1 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 582 : 316640 316559 (rev) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 281766 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 281823 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 281824 UGAGUUCGAAUCUCACCGCGUGCA 281847 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1530,emb|8254719| 598405 bp 5 contigs ----isReversed: 1 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 583 : 316171 316090 (rev) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 282235 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 282292 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 282293 UGAGUUCGAAUCUCACCGCGUGCA 282316 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1530,emb|8254719| 598405 bp 5 contigs ----isReversed: 1 ----hitSequence: GCACGUGUGGCCGAGCGGUCUAAGGCGGCGCACUCAAGUUGCGUUGGAGCGAUCCGCGUGAGUUCGAAUCUCACCGCGUGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.634146 ----pairStats: 21,0,2,1 hit 584 : 315850 315769 (rev) 56.12 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,,< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG..........gUcg 48 G::::+GU+GC::AG GGU A::GC+:CG:ACU ++ U:CG:+ G CG 282556 GCACGUGUGGCCGAGCGGUcuAAGGCGGCGCACUCAAGUUGCGUU-ggagcgauccG-CG 282613 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGAAUC:C:CC+::::CA 282614 UGAGUUCGAAUCUCACCGCGUGCA 282637 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1538,emb|8254576| 194964 bp 10 contigs ----isReversed: 0 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 585 : 123135 123208 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 123135 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 123194 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 123195 CCCCUCCGCAGGCA 123208 ----endhit ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 586 : 122917 122990 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 122917 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 122976 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 122977 CCCCUCCGCAGGCA 122990 ----endhit ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 587 : 122680 122753 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 122680 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 122739 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 122740 CCCCUCCGCAGGCA 122753 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1538,emb|8254576| 194964 bp 10 contigs ----isReversed: 0 ----hitSequence: GCCCGUGUAGCUCAGUUGGUUAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAUCCCCUCCGCAGGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.608108 ----pairStats: 21,0,1,2 hit 588 : 123369 123442 (fwd) 66.08 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G:: :+GUAGCUCAGU GGU AGAGC+:::G CU +UAA C:::AGG CG:GGGUUCGA+ 123369 GCCCGUGUAGCUCAGUuGGUuAGAGCGCGAGUCUCAUAAUCUCGAGGCCGAGGGUUCGAU 123428 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC+: ::CA 123429 CCCCUCCGCAGGCA 123442 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1542,emb|8254579| 346661 bp 3 contigs ----isReversed: 0 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 589 : 214856 214928 (fwd) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 214856 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 214915 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 214916 CUCGGAGGAAUCA 214928 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1562,emb|8254725| 108505 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 590 : 43212 43142 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 65294 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 65352 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 65353 CCGGUCGGUGCA 65364 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1562,emb|8254725| 108505 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 591 : 31180 31110 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 77326 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 77384 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 77385 CCGGUCGGUGCA 77396 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1562,emb|8254725| 108505 bp 2 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 592 : 18615 18545 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 89891 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 89949 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 89950 CCGGUCGGUGCA 89961 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1566,emb|8254580| 399732 bp 5 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 593 : 270153 270081 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 129580 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 129639 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 129640 CCCUCGGUGGGUG 129652 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1575,emb|8254582| 1075194 bp 7 contigs ----isReversed: 1 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 594 : 1049308 1049236 (rev) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 25887 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 25946 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 25947 CUCGGAGGAAUCA 25959 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1579,emb|8254583| 93101 bp 3 contigs ----isReversed: 0 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 595 : 60610 60682 (fwd) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 60610 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 60669 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 60670 CCCUCGGUGGGUG 60682 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1579,emb|8254583| 93101 bp 3 contigs ----isReversed: 0 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 596 : 61987 62059 (fwd) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 61987 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 62046 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 62047 CCCUCGGUGGGUG 62059 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1579,emb|8254583| 93101 bp 3 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 597 : 80456 80527 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 80456 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 80514 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 80515 CCCAGUGGGACCU 80527 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1582,emb|8253928| 20789 bp 2 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGCGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.5 ----pairStats: 21,0,3,0 hit 598 : 16736 16807 (fwd) 67.52 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AG GGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 16736 GGUUCCAUAGUAUAGCGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 16794 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 16795 CCCAGUGGGACCU 16807 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1591,emb|8254588| 212214 bp 2 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 599 : 191210 191131 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 21005 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 21062 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 21063 AGUUCGAAUCUCGCCUUCAUCA 21084 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1600,emb|8253930| 173734 bp 2 contigs ----isReversed: 0 ----hitSequence: GGUUCUAUAGUAUAGCGGUUAGUACUGGGGACUCUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUAGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 600 : 37509 37580 (fwd) 66.61 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:UAG:::AG GGU A:::C ::GGACU U+AAUCC::+G+ C::GGGUUCGAAU 37509 GGUUCUAUAGUAUAGCGGUuAGUACUGGGGACUCUAAAUCCCUUGA-CCUGGGUUCGAAU 37567 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 37568 CCCAGUAGGACCU 37580 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1616,emb|8254590| 838362 bp 7 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 601 : 101311 101382 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 101311 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 101369 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 101370 CCCAGUGGGACCU 101382 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1616,emb|8254590| 838362 bp 7 contigs ----isReversed: 0 ----hitSequence: AAAUAAUUGUUUAAAUGUUAAUAAAGUUAAUUUUUAAAAUUUCUGAUUUUUCAAAUUAAAUUUUUUAAUUAUUUU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).......(((((.......)))))))))))). ----hitGC: 0.08 ----pairStats: 21,0,0,3 hit 602 : 806981 807055 (fwd) 25.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...,,,<<<<<____ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...gUcgcgGGUUCg 56 ::::A::U+::U A+UG U A A::+ :::+UUU+AA::: + U+: :::UU + 806981 AAAUAAUUGUUUAAAUGUUaAUAAAGUUAAUUUUUAAAAUUUCU-gauUUUUCAAAUUAA 807039 ___>>>>>))))))): 57 AaUCCcgccaucccCA 72 A+U::: :::U:::: 807040 AUUUUUUAAUUAUUUU 807055 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1621,emb|8254591| 69152 bp 5 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 603 : 53828 53756 (rev) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 15325 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 15384 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 15385 CCGAGUGAAGGCA 15397 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1622,emb|8254737| 250189 bp 3 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 604 : 242634 242564 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 7556 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 7614 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 7615 CCGGUCGGUGCA 7626 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1622,emb|8254737| 250189 bp 3 contigs ----isReversed: 1 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 605 : 235597 235527 (rev) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 14593 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 14651 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 14652 CCGGUCGGUGCA 14663 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUACUUUGGUCUAACGGCAAAGACGGCGGACUUCUAAUCUGUAAAUCUGGGUUCGACUCCUAGAAGUAACA ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.444444 ----pairStats: 21,0,3,0 hit 606 : 68142 68213 (fwd) 60.35 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:U+G:::A+ GG A:::C+:C GACUU UAAUC G:A++ +:: GGUUCGA U 68142 GUUACUUUGGUCUAACGGCaAAGACGGCGGACUUCUAAUCUGUAAA-UCUGGGUUCGACU 68200 >>>>>))))))): 60 CCcgccaucccCA 72 CC :::A::::CA 68201 CCUAGAAGUAACA 68213 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 0 ----hitSequence: GUUACUUUGGUCUAAUGGUAAAGACGGCUGGGUCCAAUCUGCAGAUCUGGGUUCGAUUCCUAGAAGUAACA ----ssRNAplot: (((((((..((((........)))).((((........))))....(((((.......)))))))))))). ----hitGC: 0.450704 ----pairStats: 21,1,1,1 hit 607 : 69208 69278 (fwd) 44.74 bits (((((((,,<<<<______._>>>>,<<<<<_.______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaC.UuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::U:U+G:::A+UGGU A:::C+:C G U +A C G:AG+ +:: GGUUCGA+ 69208 GUUACUUUGGUCUAAUGGUaAAGACGGCUGG-gUCCAAU-CUGCAGA-UCUGGGUUCGAU 69264 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCC :::A::::CA 69265 UCCUAGAAGUAACA 69278 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 0 ----hitSequence: GGGUAACUAGCUCAAAUGGUAGAGCGUCUGGUUCGCAUUCAGAAGGCACGGGGAUCGAUGCCCCGGUUAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.547945 ----pairStats: 21,0,2,0 hit 608 : 250470 250542 (fwd) 51.35 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG :A::UAGCUCA+ GGUAGAGC+UC:G +U A C:GAAGG ::GGG UCGA+ 250470 GGGUAACUAGCUCAAAuGGUAGAGCGUCUGGUUCGCAUUCAGAAGGCACGGGGAUCGAUG 250529 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::U: CCA 250530 CCCCGGUUAUCCA 250542 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 0 ----hitSequence: GGGUAACUAGCUCAAAUGGUAGAGCGCCUGAUUUGCAUUCAGGAGGCACGGGGAUCGAUGCCCCGGUUAUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.547945 ----pairStats: 21,0,1,0 hit 609 : 250678 250750 (fwd) 57.06 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG :A::UAGCUCA+ GGUAGAGC+:C:GA+UU A UC:G:AGG ::GGG UCGA+ 250678 GGGUAACUAGCUCAAAuGGUAGAGCGCCUGAUUUGCAUUCAGGAGGCACGGGGAUCGAUG 250737 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::U: CCA 250738 CCCCGGUUAUCCA 250750 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 610 : 35632 35561 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 369153 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 369211 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 369212 CCCGGUCUCGGAG 369224 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 611 : 35264 35193 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 369521 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 369579 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 369580 CCCGGUCUCGGAG 369592 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 612 : 34995 34924 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 369790 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 369848 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 369849 CCCGGUCUCGGAG 369861 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1629,emb|8254593| 533928 bp 3 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 613 : 182065 181983 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 351864 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 351921 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 351922 GUGAGUUCGAAUCUCACAGUUGCCA 351946 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 0 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 614 : 731735 731806 (fwd) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 731735 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 731793 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 731794 CCCAGUGGGACCU 731806 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 0 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 615 : 757658 757741 (fwd) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 757658 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 757717 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 757718 CCGGUUCGAACCCGGGAGUUCGGA 757741 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 616 : 740075 740003 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 22095 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 22154 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 22155 CCCAGGUUCUCCA 22167 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 617 : 740216 740144 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 21954 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 22013 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 22014 CCCAGGUUCUCCA 22026 ----endhit ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 618 : 740358 740286 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 21812 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 21871 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 21872 CCCAGGUUCUCCA 21884 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1633,emb|8254594| 762169 bp 6 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 619 : 457771 457700 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 304399 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 304457 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 304458 CCCAGUGGGACCU 304470 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 620 : 594520 594591 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 594520 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 594578 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 594579 CCCGGUCUCGGAG 594591 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 621 : 623748 623820 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 623748 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 623807 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 623808 CCCAGGUUCUCCA 623820 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 622 : 623985 624057 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 623985 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 624044 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 624045 CCCAGGUUCUCCA 624057 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 0 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 623 : 624181 624253 (fwd) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 624181 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 624240 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 624241 CCCAGGUUCUCCA 624253 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 624 : 623651 623579 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 21074 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 21133 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 21134 CCCAGGUUCUCCA 21146 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 1 ----hitSequence: GGGGAUCUAGCUCAAAUGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUGCCCAGGUUCUCCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,1 hit 625 : 623295 623223 (rev) 49.43 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG GA :UAGCUCA+ GGUAGAGC+:::G:+U A :C:::AGG ::GGG UC+A+ 21430 GGGGAUCUAGCUCAAAuGGUAGAGCGCUCGUUUAGCAUACGAGAGGCACUGGGAUCAAUG 21489 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::: UC CCA 21490 CCCAGGUUCUCCA 21502 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 1 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 626 : 151915 151842 (rev) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 492810 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 492869 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 492870 CCCUACAUCGAGCG 492883 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1640,emb|8254597| 644724 bp 5 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 627 : 2489 2418 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 642236 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 642294 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 642295 CCCAGUGGGACCU 642307 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1641,emb|8254598| 267927 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 628 : 212540 212458 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 55388 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 55445 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 55446 GUGAGUUCGAAUCUCACAGUUGCCA 55470 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1641,emb|8254598| 267927 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 629 : 205816 205734 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 62112 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 62169 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 62170 GUGAGUUCGAAUCUCACAGUUGCCA 62194 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1641,emb|8254598| 267927 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 630 : 205454 205372 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 62474 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 62531 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 62532 GUGAGUUCGAAUCUCACAGUUGCCA 62556 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1641,emb|8254598| 267927 bp 4 contigs ----isReversed: 1 ----hitSequence: GGUAGCUUGGCCGAGAGGUUAAGGCAUGCGAGUUAAAAUCGCUGGGAUUAUAUCUGCGUGAGUUCGAUUCUCACAGCUACCA ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.487805 ----pairStats: 21,0,0,2 hit 631 : 204699 204618 (rev) 52.64 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 GG:::::U+GC::AG GGU A::GCA ::GA UU++AAUC:: G CG 63229 GGUAGCUUGGCCGAGAGGUuAAGGCAUGCGAGUUAAAAUCGCUG-ggauuauaucuG-CG 63286 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGA+UC:C:C:::::CCA 63287 UGAGUUCGAUUCUCACAGCUACCA 63310 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1641,emb|8254598| 267927 bp 4 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 632 : 123209 123138 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 144719 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 144777 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 144778 CCCGGUCUCGGAG 144790 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1660,emb|8254745| 558660 bp 4 contigs ----isReversed: 0 ----hitSequence: GCCUUUAUAGCUCAGCUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,1,0 hit 633 : 345961 346033 (fwd) 68.50 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAG GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 345961 GCCUUUAUAGCUCAGCuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 346020 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 346021 CCGAGUGAAGGCA 346033 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1660,emb|8254745| 558660 bp 4 contigs ----isReversed: 0 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 634 : 374276 374349 (fwd) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 374276 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 374335 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 374336 CCCCUCCCGGAGCA 374349 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1660,emb|8254745| 558660 bp 4 contigs ----isReversed: 1 ----hitSequence: GGUUCCAUAGUAUAGUGGUUAGUACUGGGGACUUUAAAUCCCUUGACCUGGGUUCGAAUCCCAGUGGGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,3,0 hit 635 : 55927 55856 (rev) 69.20 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :::UAG:::AGUGGU A:::C ::GGACUUU+AAUCC::+G+ C::GGGUUCGAAU 502734 GGUUCCAUAGUAUAGUGGUuAGUACUGGGGACUUUAAAUCCCUUGA-CCUGGGUUCGAAU 502792 >>>>>))))))): 60 CCcgccaucccCA 72 CCC::::: :CC 502793 CCCAGUGGGACCU 502805 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1666,emb|8254747| 1051704 bp 4 contigs ----isReversed: 1 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 636 : 821773 821693 (rev) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 229932 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 229989 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 229990 AGGUUCGAAUCCUGCAGUUGUCG 230012 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1668,emb|8254748| 306323 bp 5 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 637 : 288852 288924 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 288852 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 288911 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 288912 CCCACGGCGGGCU 288924 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1678,emb|8254751| 173421 bp 1 contigs ----isReversed: 1 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 638 : 52264 52193 (rev) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 121158 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 121216 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 121217 CCCGGUCUCGGAG 121229 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 0 ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCUGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.597222 ----pairStats: 21,0,4,0 hit 639 : 683565 683636 (fwd) 65.73 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC: GUUC+A+ C 683565 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 683624 >>>>))))))): 61 CcgccaucccCA 72 :GC:+: CCC 683625 UGGCAGGUCCCU 683636 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 0 ----hitSequence: GGAACCUUAGCUUAGUGGUAUAGCGUAGGACUGCAAAGCCUGAGUCGCCGGUUCGAUCCCGGCAGGUUCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,1,2 hit 640 : 684046 684116 (fwd) 63.13 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GG:::::UAGCU:AGUGGUA:AGC+ :GG CU+ +AA CC: AG CGC:GGUUCGA+ C 684046 GGAACCUUAGCUUAGUGGUAUAGCGUAGGACUGCAAAGCCUGAGU-CGCCGGUUCGAUCC 684104 >>>>))))))): 61 CcgccaucccCA 72 C:GC:::::CC 684105 CGGCAGGUUCCU 684116 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 0 ----hitSequence: GGAGCCUUAGCUUAGUGGUAUAGCGUAGGACUGCAAAUCCUGAGGUCGCCGGUUCGAUCCCGGCAGGUUCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,2,1 hit 641 : 684500 684571 (fwd) 71.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GG: :::UAGCU:AGUGGUA:AGC+ :GGACU+ +AAUCC: AGGUCGC:GGUUCGA+ C 684500 GGAGCCUUAGCUUAGUGGUAUAGCGUAGGACUGCAAAUCCUGAGGUCGCCGGUUCGAUCC 684559 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: :CC 684560 CGGCAGGUUCCU 684571 ----endhit ----hitSequence: GGAGCCUUAGCUUAGUGGUAUAGCGUAGGACUGCAAAUCCUGAGGUCGCCGGUUCGAUCCCGGCAGGUUCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,2,1 hit 642 : 684275 684346 (fwd) 71.75 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GG: :::UAGCU:AGUGGUA:AGC+ :GGACU+ +AAUCC: AGGUCGC:GGUUCGA+ C 684275 GGAGCCUUAGCUUAGUGGUAUAGCGUAGGACUGCAAAUCCUGAGGUCGCCGGUUCGAUCC 684334 >>>>))))))): 61 CcgccaucccCA 72 C:GC::: :CC 684335 CGGCAGGUUCCU 684346 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 0 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 643 : 1012032 1012104 (fwd) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 1012032 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 1012091 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 1012092 CUCGGAGGAAUCA 1012104 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 0 ----hitSequence: GAUUCCUUAGUGUAGUGGUUAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAACCUCGGAGGAAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.465753 ----pairStats: 21,0,0,1 hit 644 : 1018333 1018405 (fwd) 68.60 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAG:::AGUGGU A:::C+UC:G:CU + A :C:GAAGGUC:CG:GUUC+AA 1018333 GAUUCCUUAGUGUAGUGGUuAUCACGUCAGUCUAACACACUGAAGGUCCCGAGUUCAAAC 1018392 >>>>>))))))): 60 CCcgccaucccCA 72 C:CG:::::::CA 1018393 CUCGGAGGAAUCA 1018405 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 1 ----hitSequence: AUUUAUUUAAUUUAAAGAUAAUAAAUAAAUUUUAAAUUUAUUGAAAGAAUUUAAAAUCCUUUAAAAAAUU ----ssRNAplot: (((((((..((((.....))))..(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.0714286 ----pairStats: 21,0,1,4 hit 645 : 859404 859335 (rev) 25.79 bits (((((((,,<<<<_______>>>>,.<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGUAgaGCa.ucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: U:UA::U:A+ G A:A::A ::::A+UUU+AAU::::+G+ : : :UU +AAU 312012 AUUUAUUUAAUUUAA-AG-AUAAUAaAUAAAUUUUAAAUUUAUUGA-AAGAAUUUAAAAU 312068 >>>>>))))))): 60 CCcgccaucccCA 72 : : ::A :::: 312069 CCUUUAAAAAAUU 312081 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1681,emb|8254752| 1171415 bp 14 contigs ----isReversed: 1 ----hitSequence: GAUACCUUGGCUGAGUGGUAAAAGCGGCGGUCUUGAAAUCCGUUUCCUUUGAGGAGUGAGAGUUCGAUUCUCUCAGGUAUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.487805 ----pairStats: 21,0,1,2 hit 646 : 609908 609827 (rev) 60.84 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::::U+GCU:AGUGGU A:AGC+:CGG CUU +AA CCG:+ G +G 561508 GAUACCUUGGCUGAGUGGUaAAAGCGGCGGUCUUGAAAUCCGUU-uccuuugaggaG-UG 561565 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGA+UC:C:C::::::C 561566 AGAGUUCGAUUCUCUCAGGUAUCG 561589 ----endhit ----hitSequence: GAUACCUUGGCUGAGUGGUAAAAGCGGCGGUCUAGAAAUCCGUUUCCUGUCAGGAGUGAGAGUUCAAUUCUCUCAGGUAUCA ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.47561 ----pairStats: 21,0,1,2 hit 647 : 610080 609999 (rev) 58.64 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::::U+GCU:AGUGGU A:AGC+:CGG CU +AA CCG:+ G +G 561336 GAUACCUUGGCUGAGUGGUaAAAGCGGCGGUCUAGAAAUCCGUU-uccugucaggaG-UG 561393 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUC+A+UC:C:C::::::CA 561394 AGAGUUCAAUUCUCUCAGGUAUCA 561417 ----endhit ----hitSequence: GAUACCUUGGCUGAGUGGUAAAAGCGGCGGUCUAGAAAUCCGUUUCCUAUCAGGAGUGAGAGUUCGAUUCUCUCAGGUAUCG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.487805 ----pairStats: 21,0,1,2 hit 648 : 610274 610193 (rev) 57.65 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...........,,,< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUcg 48 G::::::U+GCU:AGUGGU A:AGC+:CGG CU +AA CCG:+ G +G 561142 GAUACCUUGGCUGAGUGGUaAAAGCGGCGGUCUAGAAAUCCGUU-uccuaucaggaG-UG 561199 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 :G:GUUCGA+UC:C:C::::::C 561200 AGAGUUCGAUUCUCUCAGGUAUCG 561223 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1693,emb|8254756| 635630 bp 2 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 649 : 42496 42569 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 42496 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 42555 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 42556 CCCUACAUCGAGCG 42569 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1693,emb|8254756| 635630 bp 2 contigs ----isReversed: 0 ----hitSequence: GCUCGAUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAUCCCUACAUCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.554054 ----pairStats: 21,0,0,0 hit 650 : 522941 523014 (fwd) 75.55 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 522941 GCUCGAUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGUAGGUUCGAU 523000 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 523001 CCCUACAUCGAGCG 523014 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1722,emb|8254760| 135599 bp 2 contigs ----isReversed: 0 ----hitSequence: GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGGUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.56338 ----pairStats: 21,0,3,0 hit 651 : 61162 61232 (fwd) 68.18 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 61162 GCACCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 61220 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 61221 CCGGUCGGUGCA 61232 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1734,emb|8254763| 427219 bp 3 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 652 : 16329 16401 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 16329 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 16387 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 16388 UCCCGGUGGGGGAA 16401 ----endhit ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 653 : 16183 16255 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 16183 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 16241 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 16242 UCCCGGUGGGGGAA 16255 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1734,emb|8254763| 427219 bp 3 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 654 : 406839 406767 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 20381 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 20440 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 20441 CCCUCGGUGGGUG 20453 ----endhit ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 655 : 407020 406948 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 20200 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 20259 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 20260 CCCUCGGUGGGUG 20272 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1734,emb|8254763| 427219 bp 3 contigs ----isReversed: 1 ----hitSequence: GCCGCUUUAGCUCAGUGGUUAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUCCCGCCAAGUGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.561644 ----pairStats: 21,0,1,0 hit 656 : 332071 331999 (rev) 72.78 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCAGUGGU AGAGCAU::G:CU UAA:C::AAGGUCG::GGUUC+A+ 95149 GCCGCUUUAGCUCAGUGGUuAGAGCAUUCGCCUAGUAAGCGAAAGGUCGGCGGUUCAAUC 95208 >>>>>))))))): 60 CCcgccaucccCA 72 CC::C:A: ::C 95209 CCGCCAAGUGGCU 95221 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1734,emb|8254763| 427219 bp 3 contigs ----isReversed: 1 ----hitSequence: GCUCGGGUAGCUCAGUUGGUUAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAGCCCCUCCCGGAGCA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,1 hit 657 : 169832 169759 (rev) 70.45 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::: :GUAGCUCAGU GGU AGAGC+U:GG:CU +UAA:CC:AAGGUCG:GGGUUC+A 257388 GCUCGGGUAGCUCAGUuGGUuAGAGCGUGGGUCUAAUAAACCCAAGGUCGAGGGUUCAAG 257447 _>>>>>))))))): 59 UCCcgccaucccCA 72 CCC:CC: :::CA 257448 CCCCUCCCGGAGCA 257461 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1735,emb|8255566| 1286 bp 1 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 658 : 40 111 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 40 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 98 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 99 CCCGGUCUCGGAG 111 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1750,emb|8254769| 162139 bp 3 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 659 : 99049 99121 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 99049 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 99107 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 99108 UCCCGGUGGGGGAA 99121 ----endhit ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 660 : 98876 98948 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 98876 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 98934 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 98935 UCCCGGUGGGGGAA 98948 ----endhit ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 661 : 98709 98781 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 98709 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 98767 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 98768 UCCCGGUGGGGGAA 98781 ----endhit ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 662 : 98536 98608 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 98536 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 98594 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 98595 UCCCGGUGGGGGAA 98608 ----endhit ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 663 : 98357 98429 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 98357 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 98415 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 98416 UCCCGGUGGGGGAA 98429 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1750,emb|8254769| 162139 bp 3 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 664 : 99555 99627 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 99555 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 99613 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 99614 UCCCGGUGGGGGAA 99627 ----endhit ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 665 : 99386 99458 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 99386 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 99444 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 99445 UCCCGGUGGGGGAA 99458 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1750,emb|8254769| 162139 bp 3 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 666 : 100000 100072 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 100000 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 100058 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 100059 UCCCGGUGGGGGAA 100072 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1750,emb|8254769| 162139 bp 3 contigs ----isReversed: 0 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 667 : 100199 100271 (fwd) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 100199 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 100257 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 100258 UCCCGGUGGGGGAA 100271 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1779,emb|8253970| 16363 bp 1 contigs ----isReversed: 0 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGUGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUAGGUAGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.589041 ----pairStats: 21,0,3,2 hit 668 : 10526 10598 (fwd) 56.49 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 ::: +:UA:CUCAGU GGUAGAG:+:C:G:CUUUUAA:C:G:+GGUC :GGGUUCGA 10526 ACCCGUCUAGCUCAGUcGGUAGAGUGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 10585 >>>>>))))))): 60 CCcgccaucccCA 72 CCC: :+ ::: 10586 CCCUAGGUAGGUG 10598 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1793,emb|8254776| 1004159 bp 7 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 669 : 141353 141425 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 141353 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 141412 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 141413 CCCACGGCGGGCU 141425 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1793,emb|8254776| 1004159 bp 7 contigs ----isReversed: 0 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 670 : 141896 141968 (fwd) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 141896 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 141955 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 141956 CCCACGGCGGGCU 141968 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1793,emb|8254776| 1004159 bp 7 contigs ----isReversed: 1 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 671 : 830490 830410 (rev) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 173670 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 173727 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 173728 AGGUUCGAAUCCUGCAGUUGUCG 173750 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1793,emb|8254776| 1004159 bp 7 contigs ----isReversed: 1 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 672 : 830037 829957 (rev) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 174123 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 174180 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 174181 AGGUUCGAAUCCUGCAGUUGUCG 174203 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1796,emb|8254777| 613210 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 673 : 314402 314473 (fwd) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 314402 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 314460 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 314461 CCCAGUACGACCU 314473 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1796,emb|8254777| 613210 bp 4 contigs ----isReversed: 0 ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 674 : 314812 314883 (fwd) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 314812 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 314870 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 314871 CCCAGUACGACCU 314883 ----endhit ----hitSequence: GGUUGUAUGGUGUAGCGGUUAGCACCGAGGACUUUGAAUCCUCUGACCUGGGUUCGAAUCCCAGUACGACCU ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,2,0 hit 675 : 314656 314727 (fwd) 67.10 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 GG: :U:U+G:::AG GGU A:::C ::GGACUUU AAUCC::+G+ C::GGGUUCGAAU 314656 GGUUGUAUGGUGUAGCGGUuAGCACCGAGGACUUUGAAUCCUCUGA-CCUGGGUUCGAAU 314714 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A: :CC 314715 CCCAGUACGACCU 314727 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1796,emb|8254777| 613210 bp 4 contigs ----isReversed: 0 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 676 : 505982 506064 (fwd) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 505982 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 506039 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 506040 GUGAGUUCGAAUCUCACAGUUGCCA 506064 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1796,emb|8254777| 613210 bp 4 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 677 : 451221 451149 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 161990 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 162048 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 162049 UCCCGGUGGGGGAA 162062 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1797,emb|8253976| 13549 bp 1 contigs ----isReversed: 0 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 678 : 7512 7584 (fwd) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 7512 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 7571 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 7572 CCCUCGGUGGGUG 7584 ----endhit ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 679 : 7295 7367 (fwd) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 7295 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 7354 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 7355 CCCUCGGUGGGUG 7367 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1801,emb|8253978| 78956 bp 4 contigs ----isReversed: 1 ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 680 : 3175 3103 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 75782 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 75841 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 75842 CCCUCGGUGGGUG 75854 ----endhit ----hitSequence: ACCCGUCUAGCUCAGUCGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGCCCCUCGGUGGGUG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,2,0 hit 681 : 3419 3347 (rev) 72.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::: +:UAGCUCAGU GGUAGAGC+:C:G:CUUUUAA:C:G:+GGUCG:GGGUUCGA 75538 ACCCGUCUAGCUCAGUcGGUAGAGCGCCAGCCUUUUAAGCUGGUGGUCGAGGGUUCGAGC 75597 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C:+ :::: 75598 CCCUCGGUGGGUG 75610 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1830,emb|8254782| 422999 bp 4 contigs ----isReversed: 0 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 682 : 231722 231804 (fwd) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 231722 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 231779 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 231780 GUGAGUUCGAAUCUCACAGUUGCCA 231804 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1830,emb|8254782| 422999 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 683 : 231206 231124 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 191794 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 191851 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 191852 GUGAGUUCGAAUCUCACAGUUGCCA 191876 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1830,emb|8254782| 422999 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 684 : 230753 230671 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 192247 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 192304 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 192305 GUGAGUUCGAAUCUCACAGUUGCCA 192329 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1830,emb|8254782| 422999 bp 4 contigs ----isReversed: 1 ----hitSequence: GGCAAUUUGCCCGAGUUGGUUAAGGGGGACGACUUAAGAUCGCCUGGAUGUAAUCCGCGUGAGUUCGAAUCUCACAGUUGCCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))..............(((((.......)))))))))))). ----hitGC: 0.518072 ----pairStats: 21,0,1,2 hit 685 : 230277 230195 (rev) 51.04 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,...........,,, 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG...........gUc 47 GG::A+:U+:C::AGU GGU A::G:+: :GACUU++ AUC: :+ G C 192723 GGCAAUUUGCCCGAGUuGGUuAAGGGGGACGACUUAAGAUCGCCU-ggauguaauccG-C 192780 <<<<<_______>>>>>))))))): 48 gcgGGUUCgAaUCCcgccaucccCA 72 G:G:GUUCGAAUC:C:C:+U::CCA 192781 GUGAGUUCGAAUCUCACAGUUGCCA 192805 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1842,emb|8253984| 204589 bp 2 contigs ----isReversed: 1 ----hitSequence: GCAUCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGACCCGGGUUCGAUUCCCGGUCGAUGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.535211 ----pairStats: 21,0,3,0 hit 686 : 6985 6915 (rev) 67.89 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G::::::U+::U:AGUGGUA:A::A::G::+U+ A ::C::+G+ C:CGGGUUCGA+UC 197605 GCAUCGAUGGUUUAGUGGUAGAAUAGAGCGUUGCCAUCGCUUUGA-CCCGGGUUCGAUUC 197663 >>>>))))))): 61 CcgccaucccCA 72 CCG:::::::CA 197664 CCGGUCGAUGCA 197675 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1843,emb|8254786| 439354 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 687 : 110463 110534 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 110463 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 110521 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 110522 CCCGGUCUCGGAG 110534 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1843,emb|8254786| 439354 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 688 : 124599 124670 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 124599 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 124657 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 124658 CCCGGUCUCGGAG 124670 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1843,emb|8254786| 439354 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 689 : 133259 133330 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 133259 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 133317 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 133318 CCCGGUCUCGGAG 133330 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1843,emb|8254786| 439354 bp 5 contigs ----isReversed: 0 ----hitSequence: UCCGAGAUAGUAUAGUGGUUAGUAUUCCUGCCUGUCACGCAGGAGACCCGGGUUCAAUUCCCGGUCUCGGAG ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.541667 ----pairStats: 21,0,2,0 hit 690 : 134876 134947 (fwd) 68.98 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 :::GA::UA::::AGUGGU A:::: :C:G:CU+U A :C:G:AG+ C:CGGGUUC+A+U 134876 UCCGAGAUAGUAUAGUGGUuAGUAUUCCUGCCUGUCACGCAGGAGA-CCCGGGUUCAAUU 134934 >>>>>))))))): 60 CCcgccaucccCA 72 CCCG:::UC::: 134935 CCCGGUCUCGGAG 134947 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1843,emb|8254786| 439354 bp 5 contigs ----isReversed: 1 ----hitSequence: CCGAACUUAGCUCAGUUGGAAGAGCAUCGGACUGUAAAGUUUGUAGUCAUCCGGUGGUCCCCGGUUCGAACCCGGGAGUUCGGA ----ssRNAplot: (((((((..((((........)))).(((((..................))))).....(((((.......)))))))))))). ----hitGC: 0.547619 ----pairStats: 21,0,1,0 hit 691 : 150 67 (rev) 51.77 bits (((((((,,<<<<___.____>>>>,<<<<<_______...........>>>>>,,,,,< 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAA...........uCcgaaGgUcg 48 ::G:A::UAGCUCAGU GG AGAGCA CGGACU+U+AA UCCG +GGUC: 439205 CCGAACUUAGCUCAGUuGGAAGAGCAUCGGACUGUAAAguuuguagucaUCCGGUGGUCC 439264 <<<<_______>>>>>))))))): 49 cgGGUUCgAaUCCcgccaucccCA 72 C:GGUUCGAA CC:G:::U:C::A 439265 CCGGUUCGAACCCGGGAGUUCGGA 439288 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 692 : 812705 812632 (rev) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 8579 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 8638 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 8639 CCCUUCACCGAGCG 8652 ----endhit ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 693 : 812940 812867 (rev) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 8344 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 8403 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 8404 CCCUUCACCGAGCG 8417 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GCUCGGUUAGCUCAGCUGGUUAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAUCCCUUCACCGAGCG ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.581081 ----pairStats: 21,0,0,0 hit 694 : 800418 800345 (rev) 74.97 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 G::::::UAGCUCAG GGU AGAGCAU::G:CU+UUAA:C::AAGGUCG::GGUUCGA+ 20866 GCUCGGUUAGCUCAGCuGGUuAGAGCAUGCGGCUGUUAACCGCAAGGUCGAAGGUUCGAU 20925 _>>>>>))))))): 59 UCCcgccaucccCA 72 CC::C::::::C 20926 CCCUUCACCGAGCG 20939 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 695 : 781646 781567 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 39638 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 39695 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 39696 AGUUCGAAUCUCGCCUUCAUCA 39717 ----endhit ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 696 : 781829 781750 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 39455 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 39512 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 39513 AGUUCGAAUCUCGCCUUCAUCA 39534 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 697 : 781134 781055 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 40150 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 40207 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 40208 AGUUCGAAUCUCGCCUUCAUCA 40229 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 698 : 780915 780836 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 40369 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 40426 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 40427 AGUUCGAAUCUCGCCUUCAUCA 40448 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 699 : 780429 780350 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 40855 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 40912 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 40913 AGUUCGAAUCUCGCCUUCAUCA 40934 ----endhit ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 700 : 780612 780533 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 40672 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 40729 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 40730 AGUUCGAAUCUCGCCUUCAUCA 40751 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GAUGAAGUGGCCGAGCGGUCUAAGGCGGUAGAUUAAGGCUCUAUUCCGAAAGGGCGCGAGUUCGAAUCUCGCCUUCAUCA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))...........(((((.......)))))))))))). ----hitGC: 0.5375 ----pairStats: 21,0,1,1 hit 701 : 780017 779938 (rev) 57.76 bits (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,........,,,<<< 1 GgggaugUAGCucAgUGGU..AgaGCaucgGaCUuuuAAuCcgaaG........gUcgcg 50 G::GA:GU+GC::AG GGU A::GC+:::GA+U + UC:::+ G CGCG 41267 GAUGAAGUGGCCGAGCGGUcuAAGGCGGUAGAUUAAGGCUCUAUU-ccgaaaggG-CGCG 41324 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 :GUUCGAAUC:CGCC:UC::CA 41325 AGUUCGAAUCUCGCCUUCAUCA 41346 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GCCUUUAUAGCUCAGUUGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUCCCGAGUGAAGGCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.520548 ----pairStats: 21,0,1,0 hit 702 : 768800 768728 (rev) 70.18 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::+:UAGCUCAGU GG AGAGC+U::GACU+++ AUC::A GGUC:::GGUUCGA+ 52484 GCCUUUAUAGCUCAGUuGGGAGAGCGUAAGACUGAAGAUCUUACGGUCCUCGGUUCGAUC 52543 >>>>>))))))): 60 CCcgccaucccCA 72 CC::::+::::CA 52544 CCGAGUGAAGGCA 52556 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 703 : 92375 92303 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 728909 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 728968 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 728969 CCCACGGCGGGCU 728981 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 704 : 92107 92035 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 729177 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 729235 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 729236 UCCCGGUGGGGGAA 729249 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: GCCCGCCUAGCUCAGUCGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGCCCCACGGCGGGCU ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.630137 ----pairStats: 21,0,0,0 hit 705 : 85885 85813 (rev) 75.33 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::::UAGCUCAGU GGUAGAGC+:::GACU UUAAUC:::+GGUCG:GGGUUCGA 735399 GCCCGCCUAGCUCAGUcGGUAGAGCGCAAGACUCUUAAUCUUGUGGUCGUGGGUUCGAGC 735458 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:C::::::C 735459 CCCACGGCGGGCU 735471 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1848,emb|8254788| 821283 bp 6 contigs ----isReversed: 1 ----hitSequence: UCCCCUAUAGUCUAGCAGGUUAGGAUAGAAGGUUUUCACCCUUCAGACCCGGGUUCAAGUCCCGGUGGGGGAA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.534247 ----pairStats: 21,0,3,0 hit 706 : 85571 85499 (rev) 64.67 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 :::::+:UA::::AG GGU A::::A:::G:+UUU A :C:::AG+ C:CGGGUUC+A 735713 UCCCCUAUAGUCUAGCaGGUuAGGAUAGAAGGUUUUCACCCUUCAGA-CCCGGGUUCAAG 735771 _>>>>>))))))): 59 UCCcgccaucccCA 72 UCCCG::+:::::A 735772 UCCCGGUGGGGGAA 735785 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1886,emb|8253992| 141270 bp 2 contigs ----isReversed: 1 ----hitSequence: UAAUAUUUAUAAUAUUUGGUUAAUUUAUCUAUUUUUUAAAUAGAAAAUUAAGAAAAAGUUCUAAAUUUUAA ----ssRNAplot: (((((((..((((.........)))).(((((.......))))).....((((......))))))))))). ----hitGC: 0.0985915 ----pairStats: 21,1,0,3 hit 707 : 122278 122208 (rev) 28.28 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<______ 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAa 58 ::: AU:UA :::A U GGU A::: AUC:::+UUUUAA:::GAA++U+ :G: +A 18993 UAAUAUUUAUAAUAUUuGGUuAAUUUAUCUAUUUUUUAAAUAGAAAAUUAAGA--AAAAG 19050 _>>>>>))))))): 59 UCCcgccaucccCA 72 U :C: :AU :::A 19051 U-UCUAAAUUUUAA 19063 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 708 : 233117 233188 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 233117 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 233176 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 233177 UCGGACGACCCC 233188 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 709 : 235995 236066 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 235995 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 236054 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 236055 UCGGACGACCCC 236066 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUCUCGGACGACCCC ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.569444 ----pairStats: 21,0,3,1 hit 710 : 236744 236815 (fwd) 49.30 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG: ::U+::::AGUGG A:::: :::G:+U :C:::AGGUC:CG GUUCGA+UC 236744 GGGUUGUUGGUCUAGUGGCAUGAUUCUCGUUUAGGGUACGAGAGGUCCCGGGUUCGAUUC 236803 >>>>))))))): 61 CcgccaucccCA 72 CG::: :CCC 236804 UCGGACGACCCC 236815 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 711 : 866160 866240 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 866160 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 866217 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 866218 AGGUUCGAAUCCUGCAGUUGUCG 866240 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 712 : 866400 866480 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 866400 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 866457 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 866458 AGGUUCGAAUCCUGCAGUUGUCG 866480 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 713 : 866665 866745 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 866665 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 866722 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 866723 AGGUUCGAAUCCUGCAGUUGUCG 866745 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 714 : 867028 867108 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 867028 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 867085 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 867086 AGGUUCGAAUCCUGCAGUUGUCG 867108 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 715 : 867270 867350 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 867270 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 867327 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 867328 AGGUUCGAAUCCUGCAGUUGUCG 867350 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1898,emb|8254798| 983259 bp 23 contigs ----isReversed: 0 ----hitSequence: GACAAUUUGUCCGAGUGGUUAAGGAGGAAGACUAGAAAUCUUUUGGGUUUACCCGCGCAGGUUCGAAUCCUGCAGUUGUCG ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.481481 ----pairStats: 21,0,2,1 hit 716 : 867527 867607 (fwd) 57.55 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,,<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG..........gUcgc 49 G:::A+:U+:C::AGUGGU A::G:+:::GACU +AAUC:::+ G CGC 867527 GACAAUUUGUCCGAGUGGUuAAGGAGGAAGACUAGAAAUCUUUU-ggguuuacccG-CGC 867584 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGAAUCC:GC:+U:::C 867585 AGGUUCGAAUCCUGCAGUUGUCG 867607 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1904,emb|8255740| 1328 bp 1 contigs ----isReversed: 0 ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCCGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.611111 ----pairStats: 21,0,3,0 hit 717 : 1224 1295 (fwd) 71.46 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC:GGUUC+A+ C 1224 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 1283 >>>>))))))): 61 CcgccaucccCA 72 C:GC:+: CCC 1284 CGGCAGGUCCCU 1295 ----endhit ----hitSequence: GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCCUGGCAGGUCCCU ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.597222 ----pairStats: 21,0,4,0 hit 718 : 1071 1142 (fwd) 65.73 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 GGG :+:UAGCUCAGUGG AGAGC+::GGACU+ +AAUCC::AGGUCGC: GUUC+A+ C 1071 GGGGCUUUAGCUCAGUGGCAGAGCGGAGGACUGCAAAUCCUUAGGUCGCCGGUUCAAUCC 1130 >>>>))))))): 61 CcgccaucccCA 72 :GC:+: CCC 1131 UGGCAGGUCCCU 1142 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1922,emb|8254007| 84068 bp 3 contigs ----isReversed: 1 ----hitSequence: AUCCUUGUGGCGCAAUGGUAGCGCAGUGGCCUCCUAAGCCAAAGGUUGUGAGUUCGAAUCUCACCAAGGAUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,0,1 hit 719 : 13094 13023 (rev) 72.44 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :::::UGU+GC:CA+UGGUAG:GCA :GG:CU UAA:CC: AGGU+G:G:GUUCGAAUC 70975 AUCCUUGUGGCGCAAUGGUAGCGCAGUGGCCUCCUAAGCCAAAGGUUGUGAGUUCGAAUC 71034 >>>>))))))): 61 CcgccaucccCA 72 :C:CCA::::: 71035 UCACCAAGGAUG 71046 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1922,emb|8254007| 84068 bp 3 contigs ----isReversed: 1 ----hitSequence: AUCCUUGUGGCGCAAUGGUAGCGCAGUGGCCUCCUAAGCCAAAGGUUGUGAGUUCGAAUCUCACCAAGGAUG ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.527778 ----pairStats: 21,0,0,1 hit 720 : 12828 12757 (rev) 72.44 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 :::::UGU+GC:CA+UGGUAG:GCA :GG:CU UAA:CC: AGGU+G:G:GUUCGAAUC 71241 AUCCUUGUGGCGCAAUGGUAGCGCAGUGGCCUCCUAAGCCAAAGGUUGUGAGUUCGAAUC 71300 >>>>))))))): 61 CcgccaucccCA 72 :C:CCA::::: 71301 UCACCAAGGAUG 71312 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 0 ----hitSequence: GUAGGUAUAGCUCAAUUGGUAGAGCGUUAGAUUGUGGAUCUAAAGGUCAUGGGUUCGAUUCCUAUUACUUACC ----ssRNAplot: (((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.410959 ----pairStats: 21,0,2,0 hit 721 : 25119 25191 (fwd) 73.25 bits (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgU.GGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G:: :U:UAGCUCA+U GGUAGAGC+U::GA+U+U AUC::AAGGUC:: GGUUCGA+U 25119 GUAGGUAUAGCUCAAUuGGUAGAGCGUUAGAUUGUGGAUCUAAAGGUCAUGGGUUCGAUU 25178 >>>>>))))))): 60 CCcgccaucccCA 72 CC :::A: ::C 25179 CCUAUUACUUACC 25191 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 0 ----hitSequence: GCUUAAGUAGCUCAGUGGUAGAGCGUCAGGCUGAAAACCUGAAGGUCAUUGGUCCGAUUCCAUUCUUAGGCA ----ssRNAplot: (((((((..((((.......)))).(((((.......))))).....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,1,1 hit 722 : 31063 31134 (fwd) 71.12 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G: :A:GUAGCUCAGUGGUAGAGC+UC:G:CU+++AA:C:GAAGGUC: :GGU CGA+UC 31063 GCUUAAGUAGCUCAGUGGUAGAGCGUCAGGCUGAAAACCUGAAGGUCAUUGGUCCGAUUC 31122 >>>>))))))): 61 CcgccaucccCA 72 C: :C:U: :CA 31123 CAUUCUUAGGCA 31134 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 0 ----hitSequence: ACUUAUGUGGCGGAAUAGGUAGACGCGUGGGACUUAAAAUCUCAUUCCUACGGAGUGCCGGUUCGACCCCGGUCAUAAGUA ----ssRNAplot: (((((((..((((.........)))).(((((.......)))))............(((((.......)))))))))))). ----hitGC: 0.506173 ----pairStats: 21,0,2,1 hit 723 : 44992 45072 (fwd) 52.78 bits (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,.........,,,<< 1 GgggaugUAGCucAgU.GGU.AgaGCaucgGaCUuuuAAuCcgaaG.........gUcgc 49 ::::AUGU+GC::A+U GGU ::GC+U: GACUU++AAUC :A+ G +:C 44992 ACUUAUGUGGCGGAAUaGGUaGACGCGUGGGACUUAAAAUCUCAU-uccuacggaG-UGC 45049 <<<_______>>>>>))))))): 50 gGGUUCgAaUCCcgccaucccCA 72 :GGUUCGA CC:G:CAU::::A 45050 CGGUUCGACCCCGGUCAUAAGUA 45072 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 0 ----hitSequence: GAGGUGGUGGCUGAAUGGUUAAAGCGGUAGACUGUAAAUCUAUUGGGAUUCCCGUCGCCGGUUCGAUUCCGGUCCACCUCA ----ssRNAplot: (((((((..((((........)))).(((((.......))))).............(((((.......)))))))))))). ----hitGC: 0.530864 ----pairStats: 21,0,2,1 hit 724 : 45375 45455 (fwd) 69.28 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,.........,,,<<< 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaG.........gUcgcg 50 G:GG::GU+GCU:A+UGGU A:AGC+:::GACU+U+AAUC:::+ GUC:C: 45375 GAGGUGGUGGCUGAAUGGUuAAAGCGGUAGACUGUAAAUCUAUU-gggauucccGUCGCC 45433 <<_______>>>>>))))))): 51 GGUUCgAaUCCcgccaucccCA 72 GGUUCGA+UCC:G:C::CC:CA 45434 GGUUCGAUUCCGGUCCACCUCA 45455 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 1 ----hitSequence: GGGGGAAUAGUUUAAUGGUAGAACAACGGUCUUCAAAAUCGUUAGCGUGGGUUCGAUUCCUGCUUCUCUCG ----ssRNAplot: (((((((..((((.......)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.464789 ----pairStats: 21,0,6,0 hit 725 : 9474 9404 (rev) 64.61 bits (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______> 1 GgggaugUAGCucAgUGGUAgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaUC 60 G G :::UAG:U:A+UGGUA:A:CA:CG :CUU +AA: CG:++G CG GGUUCGA+UC 36065 GGGGGAAUAGUUUAAUGGUAGAACAACGGUCUUCAAAAUCGUUAG-CGUGGGUUCGAUUC 36123 >>>>))))))): 61 CcgccaucccCA 72 C C::: C C 36124 CUGCUUCUCUCG 36135 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1971,emb|Mito-8232510| 45538 bp 1 contigs ----isReversed: 1 ----hitSequence: GCUCUUAUCGUCUAGCGGUUAGGACAACGGGUUUUCACCCCGUAAACUUGGGUUCGAUUCCCAAUAAGAGCA ----ssRNAplot: (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))). ----hitGC: 0.486111 ----pairStats: 21,0,1,0 hit 726 : 3168 3097 (rev) 68.31 bits (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______ 1 GgggaugUAGCucAgUGGU.AgaGCaucgGaCUuuuAAuCcgaaGgUcgcgGGUUCgAaU 59 G::::U:U G:::AG GGU A:::CA:CGG:+UUU A :CCG:A++ C::GGGUUCGA+U 42371 GCUCUUAUCGUCUAGCGGUuAGGACAACGGGUUUUCACCCCGUAAA-CUUGGGUUCGAUU 42429 >>>>>))))))): 60 CCcgccaucccCA 72 CCC:::A::::CA 42430 CCCAAUAAGAGCA 42442 ----endhit Found 727 hits. done 2.08166e+08 nucs (frac lets thru so far=0.0144638345, 2d-fracLetsThru=0.00776282). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.523554297, 2d-fracLetsThru=0.368033). Filter report: done 1.08986e+08 nucs (frac lets thru so far=0.340144149, 2d-fracLetsThru=0.283202). Filter report: done 3.70711e+07 nucs (frac lets thru so far=0.146558392, 2d-fracLetsThru=0.134838). Filter report: done 5.43308e+06 nucs (frac lets thru so far=0.55417639, 2d-fracLetsThru=0.552361). FULL: done 2.08166e+08 nucs (frac lets thru so far=0.0144638345, 2d-fracLetsThru=0.00776282). CPU time: 53052.73u 4.15s 14:44:16.88 Elapsed: 14:44:41 DONEdoneDONEdone