Params: release/cmzasha --no-stderr --filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00011_RNaseP_bact_b/RF00011_at40.filterspec Build: release Host: cs013 pid: 451 ---time: Mon Jul 4 05:26:56 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00011_Saureus_expanded.hmm 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00011_Saureus_expanded.hmm 1/remember-nuc,56,l-CGU-A-_,88,l-ACGU-_,114,l-ACGU-_,136,r-ACGU-_,172,l-AGU-C-_,219,r-ACG-U-_,283,r-AC-GU-_,299,l-ACGU-_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00011_Saureus_expanded.hmm 1/remember-nuc,56,l-CGU-A-_,55,r-ACGU-_,54,r-ACGU-_,88,l-AGU-C-_,87,r-AU-CG-_,114,l-ACGU-_,113,r-ACG-U-_,136,r-ACGU-_,135,r-ACGU-_,134,r-ACGU-_,172,l-ACGU-_,171,l-ACG-U-_,170,r-ACGU-_,219,r-ACG-U-_,218,l-ACGU-_,217,l-AGU-C_,233,l-AGU-C-_,232,r-ACGU-_,258,r-ACGU-_,256,l-ACG-U_,283,r-AC-GU-_,282,l-AG-CU-_,299,l-ACGU-_,298,l-ACGU-_,297,r-ACGU-_,296,r-ACGU-_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00011_Saureus_expanded.hmm 1/sub,83,63/sub,133,45 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00011.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ;Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ----2struct-info: only-hmm Exploded HMM has 1858 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00011.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ;Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ----2struct-info: 1/remember-nuc,56,l-CGU-A-_/remember-nuc,88,l-ACGU-_/remember-nuc,114,l-ACGU-_/remember-nuc,136,r-ACGU-_/remember-nuc,172,l-AGU-C-_/remember-nuc,219,r-ACG-U-_/remember-nuc,283,r-AC-GU-_/remember-nuc,299,l-ACGU-_ Exploded HMM has 4410 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00011.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ;Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ----2struct-info: 1/remember-nuc,56,l-CGU-A-_/remember-nuc,55,r-ACGU-_/remember-nuc,54,r-ACGU-_/remember-nuc,88,l-AGU-C-_/remember-nuc,87,r-AU-CG-_/remember-nuc,114,l-ACGU-_/remember-nuc,113,r-ACG-U-_/remember-nuc,136,r-ACGU-_/remember-nuc,135,r-ACGU-_/remember-nuc,134,r-ACGU-_/remember-nuc,172,l-ACGU-_/remember-nuc,171,l-ACG-U-_/remember-nuc,170,r-ACGU-_/remember-nuc,219,r-ACG-U-_/remember-nuc,218,l-ACGU-_/remember-nuc,217,l-AGU-C_/remember-nuc,233,l-AGU-C-_/remember-nuc,232,r-ACGU-_/remember-nuc,258,r-ACGU-_/remember-nuc,256,l-ACG-U_/remember-nuc,283,r-AC-GU-_/remember-nuc,282,l-AG-CU-_/remember-nuc,299,l-ACGU-_/remember-nuc,298,l-ACGU-_/remember-nuc,297,r-ACGU-_/remember-nuc,296,r-ACGU-_ ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00011.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ;Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00011.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node013 pid: 29343 ----2struct-info: 1/sub,83,63/sub,133,45 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00011.cm (global) ----CM-scanning-logic: Infernal-0.55 Found 0 hits. done 2.08166e+08 nucs (frac lets thru so far=0.00422861902, 2d-fracLetsThru=0.00223439). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.0751812399, 2d-fracLetsThru=0.0444511). Filter report: done 1.56502e+07 nucs (frac lets thru so far=0.472542174, 2d-fracLetsThru=0.450306). Filter report: done 7.39538e+06 nucs (frac lets thru so far=0.282730164, 2d-fracLetsThru=0.269683). Filter report: done 2.0909e+06 nucs (frac lets thru so far=0.420994434, 2d-fracLetsThru=0.413919). FULL: done 2.08166e+08 nucs (frac lets thru so far=0.00422861902, 2d-fracLetsThru=0.00223439). CPU time: 59971.05u 46.01s 16:40:17.06 Elapsed: 16:42:30 DONEdoneDONEdone