Params: release/cmzasha --no-stderr --filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00059_THI/RF00059_at15.filterspec Build: release Host: node019 pid: 4207 ---time: Mon Jul 4 05:50:21 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00059_Ecoli_expanded.hmm 1/remember-nuc,42,r-AU-CG-_,41,r-AGU-C_,40,r-ACU-G_,38,r-ACU_-G,58,r-ACGU-_,57,r-ACGU-_,56,r-ACU-G_,55,l-CU-A-G-_,78,l-ACU_-G,77,l-CGU-A_,76,r-CU-A-G-_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00059_Ecoli_expanded.hmm 1/remember-nuc,42,r-AU-CG-_,41,r-AU-C-G-_,40,r-ACU-G_,38,r-ACU_-G,37,r-AGU_-C,58,r-ACGU-_,57,r-ACGU-_,56,r-AG-CU-_,55,l-CU-A-G-_,54,r-AU-CG-_,78,l-ACU_-G,77,l-CGU-A_,76,r-CU-A-G-_,75,r-ACU_-G,69,l-ACG_-U 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00059_Ecoli_expanded.hmm 1/sub,40,132/sub,54,148/sub,70,300 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00059_Ecoli_expanded.hmm 1/sub,40,132/sub,53,169/sub,67,300 Exploded HMM has 2192 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00059.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ;Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ----2struct-info: 1/remember-nuc,42,r-AU-CG-_/remember-nuc,41,r-AGU-C_/remember-nuc,40,r-ACU-G_/remember-nuc,38,r-ACU_-G/remember-nuc,58,r-ACGU-_/remember-nuc,57,r-ACGU-_/remember-nuc,56,r-ACU-G_/remember-nuc,55,l-CU-A-G-_/remember-nuc,78,l-ACU_-G/remember-nuc,77,l-CGU-A_/remember-nuc,76,r-CU-A-G-_ Exploded HMM has 8104 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00059.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ;Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ----2struct-info: 1/remember-nuc,42,r-AU-CG-_/remember-nuc,41,r-AU-C-G-_/remember-nuc,40,r-ACU-G_/remember-nuc,38,r-ACU_-G/remember-nuc,37,r-AGU_-C/remember-nuc,58,r-ACGU-_/remember-nuc,57,r-ACGU-_/remember-nuc,56,r-AG-CU-_/remember-nuc,55,l-CU-A-G-_/remember-nuc,54,r-AU-CG-_/remember-nuc,78,l-ACU_-G/remember-nuc,77,l-CGU-A_/remember-nuc,76,r-CU-A-G-_/remember-nuc,75,r-ACU_-G/remember-nuc,69,l-ACG_-U ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00059.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ;Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ----2struct-info: 1/sub,40,132/sub,54,148/sub,70,300 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00059.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ;Params: release/cmzasha --create-rigorous-filter 300 15 /home/kasiaw/Rfam_7.0/CM/RF00059.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node008 pid: 23264 ----2struct-info: 1/sub,40,132/sub,53,169/sub,67,300 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00059.cm (global) ----CM-scanning-logic: Infernal-0.55 Found 0 hits. done 2.08166e+08 nucs (frac lets thru so far=0.00092318975, 2d-fracLetsThru=0.000467329). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.614089078, 2d-fracLetsThru=0.448171). Filter report: done 1.27833e+08 nucs (frac lets thru so far=0.493135569, 2d-fracLetsThru=0.410273). Filter report: done 6.30388e+07 nucs (frac lets thru so far=0.021985751, 2d-fracLetsThru=0.0184656). Filter report: done 1.38596e+06 nucs (frac lets thru so far=0.138660246, 2d-fracLetsThru=0.137639). FULL: done 2.08166e+08 nucs (frac lets thru so far=0.00092318975, 2d-fracLetsThru=0.000467329). CPU time: 178715.69u 762.88s 49:51:18.57 Elapsed: 49:59:12 DONEdoneDONEdone