Params: release/cmzasha --no-stderr --filter 200 15 /home/kasiaw/Rfam_7.0/CM/RF00309.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00309_snosnR60_Z15/RF00309_at15.filterspec Build: release Host: cs010 pid: 10447 ---time: Mon Jul 4 18:25:52 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00309_Saureus_compact.hmm hmm /home/kasiaw/Rfam_7.0_filters/RF00309_Saureus_expanded.hmm ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00309.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 200 15 /home/kasiaw/Rfam_7.0/CM/RF00309.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 23077 ;Params: release/cmzasha --create-rigorous-filter 200 15 /home/kasiaw/Rfam_7.0/CM/RF00309.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 23077 ----2struct-info: only-hmm ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00309.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 200 15 /home/kasiaw/Rfam_7.0/CM/RF00309.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 23077 ;Params: release/cmzasha --create-rigorous-filter 200 15 /home/kasiaw/Rfam_7.0/CM/RF00309.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node020 pid: 23077 ----2struct-info: only-hmm ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00309.cm (global) ----CM-scanning-logic: Infernal-0.55 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #381,emb|8254435| 356818 bp 1 contigs ----isReversed: 1 ----hitSequence: UAUGAUGAUGAUUAAUUGGAUUUAAGCUAAUAAAAUGAUAUGAUAGAUGAAUCUGAUGAAGAAAAAUAUUUAGAAUUUUACUUAAAAUCUGAAAUUU ----ssRNAplot: ((((...............((..............................(((..................)))...........))....)))). ----hitGC: 0.195876 ----pairStats: 11,2,1,3 hit 0 : 66909 66813 (rev) 18.67 bits <<<<------------------<<<<--------------........--------<<<_ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaa........UuUAUGAAGAUu 52 ::: A UGAUGAU+AA +UG AU UU A CU AU+AAA U+ AUGAA :U+ 289910 UAUGA-UGAUGAUUAA--UUGGAU--UUAAGCUAAUAAAAugauaugaUAGAUGAAUCUG 289964 __________________>>>-------->.>>>---->>>>: 53 AAaAUUCCAUCGAAUUUAGUCUUUCGCUCC.UAUCUGAuggcU 94 A A A +AUUUAG: UUU CU AUCUGA :::U 289965 AUGAAG-AAAAAUAUUUAGAAUUUUACUUAaAAUCUGAAAUUU 290006 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #417,emb|8254444| 399810 bp 1 contigs ----isReversed: 1 ----hitSequence: UUUAAUUUAUUAUUUAAAGCAUAUGAAUUCAUCAAAAUUUGAUUAUGAUAAAAAUUGGUUCAUUUAAUCUUUUCGAAUCUAUAGCC ----ssRNAplot: ((((................(((.......................(((.................)))......)))...)))). ----hitGC: 0.197674 ----pairStats: 11,1,1,2 hit 1 : 199328 199243 (rev) 15.43 bits <<<<------------------<<<<--------------..--------<<<_______ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaa..UuUAUGAAGAUuAAaAUU 58 +U:AA U AU AU+ A A+GCAU+ U AA U AU AAA UU AU A+GA:+AAAAUU 200483 UUUAAUUUAUUAUUUA--AAGCAUA--UGAAUUCAUCAAAauUUGAUUAUGAUAAAAAUU 200538 ____________>>>-------->>>>---->>>>: 59 CCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 UC AUUUA:UCUUU UC +AUCU AU:G++ 200539 GGUUC--AUUUAAUCUUU---UCGAAUCU-AUAGCC 200568 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #437,emb|8254454| 99508 bp 1 contigs ----isReversed: 0 ----hitSequence: GCUAGAUUAUGAUUUUUGUAAUUGCUAAAAUUCAUUUUGAUUAAAUUAUACAUUCUAAGUAUAAUCUAACUCUCUUUAUAAUUAUGAAGAUUCCAAAUUAAAUAUUUUUUAACUCAUUUUAUCU ----ssRNAplot: ((((......................((((....................................................(((...................)))........)))))))). ----hitGC: 0.185484 ----pairStats: 11,0,0,4 hit 2 : 58323 58446 (fwd) 16.66 bits <<<<---------.....---------.<<<<----.----------............. 1 gucaAAUGAUGAU.....CAAaAAUGC.AUAGUUCA.ACUGAuuAaa............. 40 G::A AU AUGAU +AA +UGC A A:UUCA UGAUUAAA 58323 GCUAGAUUAUGAUuuuugUAA--UUGCuAAAAUUCAuUUUGAUUAAAuuauacauucuaa 58380 ................--------<<<___________________>>>-------->>> 41 ................UuUAUGAAGAUuAAaAUUCCAUCGAAUUUAGUCUUUCGCUCCUA 84 UUUAU A+ A +AA AUUCCA ++A +UA U UUU CUC:U 58381 guauaaucuaacucucUUUAUAAUUAUGAAGAUUCCAAAUUAAAUAUUUUUUAACUCAUU 58440 >---->>>>: 85 UCUGAuggcU 94 U U::CU 58441 U----UAUCU 58446 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #461,emb|8254605| 384764 bp 4 contigs ----isReversed: 0 ----hitSequence: UUAAUAUUAUUAUUACUUGCCUAGUUGAUAUGAGAAAUAUUAUUAGCUUAGUUGCAAUAAAUAUUGUUUCCUAUCUGACUGAU ----ssRNAplot: ((((................((((...................(((.................)))....))))....)))). ----hitGC: 0.240964 ----pairStats: 11,0,3,2 hit 3 : 350512 350594 (fwd) 17.23 bits <<<<------------------<<<<----------------------<<<_________ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAUUCC 60 :U: AU AU AU+A +UGC:UAGUU A +UGA +AA AU A+ A A UU C 350512 UUAAUAUUAUUAUUAC--UUGCCUAGUUGAUAUGAGAAAU---AUUAUUAGCUUAGUUGC 350566 __________>>>-------->>>>---->>>>: 61 AUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 A A +UA U UUU CCUA:CUGA :G:U 350567 AAU--AAAUAUUGUUU----CCUAUCUGACUGAU 350594 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #504,emb|8253811| 495369 bp 4 contigs ----isReversed: 0 ----hitSequence: AGCAUCUGAUGAUUUAUCAAAUAUGCAUAUUUGUUACUGAUUUGUUAUCAAAAAAUCAUAAUUCUAAUUUUUAUUUUUGCUUGAAUCUAAUUUUU ----ssRNAplot: ((((......................((((.....................((...................))........))))....)))). ----hitGC: 0.2 ----pairStats: 11,1,2,3 hit 4 : 469053 469147 (fwd) 19.02 bits <<<<---------....---------<<<<----.------------------<<<____ 1 gucaAAUGAUGAU....CAAaAAUGCAUAGUUCA.ACUGAuuAaaUuUAUGAAGAUuAAa 55 ::A UGAUGAU CAAA AUGCAU+:UU ACUGAUU UUAU AA: +A 469053 AGCAUCUGAUGAUuuauCAAAUAUGCAUAUUUGUuACUGAUUU--GUUAUCAAAA-AAUC 469109 _______________>>>-------->>>>---->>>>: 56 AUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 AU UC+AAUUU :UUU GCU :+AUCU AU:: U 469110 AUA-AUUCUAAUUUUUAUUUUUGCUUGAAUCUAAUUUUU 469147 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #520,emb|8254617| 935000 bp 2 contigs ----isReversed: 1 ----hitSequence: UUUAUGUGAUGAUAACAUUGGGAUUUUCUGCUAAUAUUGCAGAACUGAUUUCCUCAAACAUUAAUUUGUAUUUAGAUUCAUCAUGUCUUGUACACCAUUAAUGAUCUUU ----ssRNAplot: ((((....................................((((........................(((.............))).........))))....)))). ----hitGC: 0.284404 ----pairStats: 11,0,2,6 hit 5 : 695379 695271 (rev) 16.81 bits <<<<---------..................---------<<<<--------------.. 1 gucaAAUGAUGAU..................CAAaAAUGCAUAGUUCAACUGAuuAaa.. 40 :+ A +UGAUGAU +AA+A+UGC+:A: CUGAUU 239622 UUUAUGUGAUGAUaacauugggauuuucugcUAAUAUUGCAGAA-----CUGAUUUCCuc 239676 .....--------<<<___________________>>>--------.>>>>---->>>>: 41 .....UuUAUGAAGAUuAAaAUUCCAUCGAAUUUAGUCUUUCGCUC.CUAUCUGAuggcU 94 UU+AU :AUU A AUU CAUC AU GU:UU C C :U:+ UGAU +:U 239677 aaacaUUAAUUUGUAUUUAGAUU-CAUC--AU---GUCUUGUACACcAUUAAUGAUCUUU 239730 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #659,emb|8254645| 1076301 bp 3 contigs ----isReversed: 0 ----hitSequence: ACAAAAUAGAUGAUCGAAUAUUAAUAUCAGCGAAUAAAUAAAUGAAUAAAUAAAUGCAGAUAAACUAUUAAAAGUUUUUUUUUUUUCACUUGAAUUUGAUUGAU ----ssRNAplot: ((((.............................((((.....................(((...................)))........))))....)))). ----hitGC: 0.192308 ----pairStats: 11,0,1,4 hit 6 : 160048 160151 (fwd) 15.38 bits <<<<---.------..........---------<<<<----------------------< 1 gucaAAU.GAUGAU..........CAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAG 49 ::AAAU GAUGAU +A A G AU+: U AA+UGA UAAAU++AUG A 160048 ACAAAAUaGAUGAUcgaauauuaaUAUCAGCGAAUAAAU-AAAUGAAUAAAUAAAUGCAG 160106 <<___.________________>>>-------->>>>---->>>>: 50 AUuAA.aAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 A +AA +AUU A G++UUU U UUUC CU :+AU UGAU:: U 160107 AUAAAcUAUU-AAAAGUUUUUUUUUUUUCACUUGAAUUUGAUUGAU 160151 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #669,emb|8254649| 819627 bp 9 contigs ----isReversed: 1 ----hitSequence: UGAAUUUAAUGAUUAAAAUUCAAGAAUAUUAACAGAAUUUGUGAAGAACUAUUUGAGAAUAUUUUUUUUGCACUAUCUGAUCAAU ----ssRNAplot: ((((.....................(((.................((................))........)))....)))). ----hitGC: 0.211765 ----pairStats: 11,2,1,2 hit 7 : 492747 492663 (rev) 16.16 bits <<<<----------------...--<<<<----------------------<<<______ 1 gucaAAUGAUGAUCAAaAAU...GCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAU 57 : :A U AUGAU+AAAA+U G AUA UU AAC GA U +UGAA A A +AU 326881 UGAAUUUAAUGAUUAAAAUUcaaGAAUA-UU-AACAGAAUUU----GUGAAGA--ACUAU 326932 _____________>>>-------->>>>---->>>>: 58 UCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 U A GAAU+U U UUU GC C UAUCUGAU: :U 326933 UUGA--GAAUAUU-UUUUUUGCAC-UAUCUGAUCAAU 326965 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #676,emb|8254650| 1231906 bp 7 contigs ----isReversed: 0 ----hitSequence: CAAAAAUGAUUAUUAACUAUGACUAAUUAAAUCAUAUAUUAAUAAUUAAUUAAUUAAUCAAUCAAAUAUUGAUUCACUCUCUAACUGGUCUAU ----ssRNAplot: ((((..................((((....................(((...................))).........))))....)))). ----hitGC: 0.182796 ----pairStats: 11,0,1,4 hit 8 : 989292 989384 (fwd) 15.26 bits <<<<------------------<<<<----------------------<<<______.._ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAU..U 58 ::AAAUGAU AU+AA AUG :UA: U AA+U AU+ A UU+AU A+ A:U AA U U 989292 CAAAAAUGAUUAUUAACUAUGACUAA-UUAAAUCAUAUA-UUAAUAAUUAAUUAAUUaaU 989349 ____________>>>--------.>>>>---->>>>: 59 CCAUCGAAUUUAGUCUUUCGCUC.CUAUCUGAuggcU 94 C AUC A +UA:U UUC CUC :UA:CUG U:: U 989350 CAAUC--AAAUAUUGAUUCACUCuCUAACUGGUCUAU 989384 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: CAUCUCUGAUAAUUAUUUAUUUAAUUCUUCAUUUGAAUUUUUCAACUGAUUUAUUAAAUGAACAUAUUAUUCUUCUGUUUGUUUAUUUUUCUCAACUCUGGUAUUU ----ssRNAplot: ((((................................((((......................((...................))........))))....)))). ----hitGC: 0.207547 ----pairStats: 11,1,0,4 hit 9 : 1502421 1502316 (rev) 17.84 bits <<<<---------................---------<<<<------------------ 1 gucaAAUGAUGAU................CAAaAAUGCAUAGUUCAACUGAuuAaaUuUA 44 ::: UGAU AU CA +UG A :UUCAACUGAUU A U++A 713738 CAUCUCUGAUAAUuauuuauuuaauucuuCAU--UUGAAUUUUUCAACUGAUUUAUUAAA 713795 ----<<<___________________>>>-------->>>>---->>>>: 45 UGAAGAUuAAaAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 UGAA A UA +AUU C UC+ +UU U UUU CUC: UCUG ::: U 713796 UGAACA-UAUUAUU-CUUCUGUUUGUUUAUUUUUCUCAACUCUGGUAUUU 713843 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #712,emb|8254803| 2216158 bp 20 contigs ----isReversed: 1 ----hitSequence: AGUCAAUGAUGAUAUCAUCACCUAAUUUCAUAUUUAACUAAGCAUUUUUGGGAUUUGAUUUAAAGUUUUAUCUUUUAAUAGUGUUUGUCUUUAAUCUGAGAUAU ----ssRNAplot: ((((.........................((((..........................(((..................)))........))))....)))). ----hitGC: 0.240385 ----pairStats: 11,0,2,5 hit 10 : 1360651 1360548 (rev) 15.64 bits <<<<---------.........---------<<<<--------------.....------ 1 gucaAAUGAUGAU.........CAAaAAUGCAUAGUUCAACUGAuuAaa.....UuUAUG 46 :::AAUGAUGAU +AA +U CAU+:UU AACU A A +U UG 855508 AGUCAAUGAUGAUaucaucaccUAA--UUUCAUAUUU-AACUAAGCAUUuuuggGAUUUG 855564 --<<<________________.___>>>-------->>>>---->>>>: 47 AAGAUuAAaAUUCCAUCGAAU.UUAGUCUUUCGCUCCUAUCUGAuggcU 94 A+ :+A + UU AUC+++U +UA: UUU CU :+AUCUGA::: U 855565 AUUUAAAGUUUU--AUCUUUUaAUAGUGUUUGUCUUUAAUCUGAGAUAU 855611 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #736,emb|8254664| 501920 bp 2 contigs ----isReversed: 0 ----hitSequence: UAUAAAAGAUGAGUAAAAAAACCUCUUAAAAUAACUUGAAAAAGAUGUUAAUGAAAAUUACAAAUAUUUUGAUUUAUCACCUGAAUCUGAGAAAU ----ssRNAplot: ((((..................(((........................(((...................))).........)))....)))). ----hitGC: 0.210526 ----pairStats: 11,1,0,4 hit 11 : 11145 11239 (fwd) 16.80 bits <<<<------------------<<<<--------------..--------<<<_______ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaa..UuUAUGAAGAUuAAaAUU 58 : : AA GAUGA +AAAAA+ C:U: UU AA+U A U A + AUG +:A:+AAAAUU 11145 UAUAAAAGAUGAGUAAAAAAACCUC-UUAAAAUAACUUGAaaAAGAUGUUAAUGAAAAUU 11203 ____________>>>-------->>>>---->>>>: 59 CCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 +CA +A+UUU :U:U UC C :A:CUGA : :U 11204 ACAAAUAUUUUGAUUUAUCACCUGAAUCUGAGAAAU 11239 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #758,emb|8254811| 1389364 bp 15 contigs ----isReversed: 1 ----hitSequence: UUCAAAUAAUAUAAAUACAAAGCAAUAUUCAUAUUAAUUGUGGUAAAUAUUUAGAUUUGAUAUUUUAUAAUCUUUUAAUCUUAUCUGAUUUGC ----ssRNAplot: ((((...................((((....................(((...................)))........))))....)))). ----hitGC: 0.172043 ----pairStats: 11,0,1,5 hit 12 : 848686 848594 (rev) 15.07 bits <<<<------------..------<<<<------------------.----<<<______ 1 gucaAAUGAUGAUCAA..aAAUGCAUAGUUCAACUGAuuAaaUuUA.UGAAGAUuAAaAU 57 +:AAAU AU AU AA AA+GCA :UUCA +U A U + U AA:A:U A AU 540679 UUCAAAUAAU-AUAAAuaCAAAGCAAUAUUCAUAUUAAUUGU---GgUAAAUAUUUAGAU 540734 _____________>>>-------->>>>---->>>>: 58 UCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 U AU +++U+UA:U:UUU UC: UCUGAU:+ + 540735 UUGAUAUUUUAUAAUCUUUUAAUCUUAUCUGAUUUGC 540771 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #765,emb|8254814| 591214 bp 5 contigs ----isReversed: 1 ----hitSequence: UUUUUUUUAUUUAAAUACAAAUUCAAAUGAUUAAUAAGUUUAUUUAAUGAGACAAGUGCUUUAUAAAUAUUAUUAUUUAUUAGUAAAUUAUGUUAUGAUCUUUCUGAAAUUU ----ssRNAplot: ((((..............(((..............................................(((...................)))........)))....)))). ----hitGC: 0.142857 ----pairStats: 11,1,1,2 hit 13 : 317281 317170 (rev) 15.59 bits <<<<------------------<<<<--------------.................... 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaa.................... 40 :+:: U AU U+AA AU CA A UUCAA+UGAUUAA 273934 UUUUUUUUAU--UUAA--AUACAAA-UUCAAAUGAUUAAUaaguuuauuuaaugagacaa 273988 ....--------<<<___________________>>>-------->>>>---->>>>: 41 ....UuUAUGAAGAUuAAaAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 UUUAU AA A:UA +AUU U G+A +U :U UU G UC U UCUGA::+:U 273989 gugcUUUAUAAAUAUUAUUAUUUAUUAGUAAAUUAUGUUAUGAUC-UUUCUGAAAUUU 274045 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #768,emb|8254815| 909308 bp 16 contigs ----isReversed: 1 ----hitSequence: UAUAAUGAUGAUUAAAAAUUCAUAGUUAUUUGAUUACAUUAUGAAUAAUAGUAAUUGAAAAUAAAAUAUCUAUUAAAUAUUUGAUAAAU ----ssRNAplot: ((((.................((((.................(((..................)))..........))))....)))). ----hitGC: 0.123596 ----pairStats: 11,0,0,5 hit 14 : 647231 647143 (rev) 21.13 bits <<<<------------------<<<<----------------------<<<_________ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAUUCC 60 : :AA UGAUGAU+AAAAAU CAUA U A UGAUUA AU A+ :UAA+A U 262078 UAUAA-UGAUGAUUAAAAAUUCAUAG-UUAUUUGAUUAC----AUUAUGAAUAAUAGU-A 262130 __________>>>--------..>>>>---->>>>: 61 AUCGAAUUUAGUCUUUCGCUC..CUAUCUGAuggcU 94 AU GAA +UA: U UC U UAU UGAU: :U 262131 AUUGAAAAUAAAAUAUCUAUUaaAUAUUUGAUAAAU 262166 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #842,emb|8254686| 541833 bp 6 contigs ----isReversed: 0 ----hitSequence: UAGAAAUUGAUAAAUUAUUAAAAAUGCAUAGACAGACAAAUAAAUAAAUAAAAAUAUUCAUUGUUUUGUUUUGAUUCAAACAUAUUUAU ----ssRNAplot: ((((.......................((((.................(((..............)))........))))....)))). ----hitGC: 0.157303 ----pairStats: 11,0,2,2 hit 15 : 18454 18542 (fwd) 16.68 bits <<<<---------.......---------<<<<----------------------<<<__ 1 gucaAAUGAUGAU.......CAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuA 53 :::AAAU UGAU +AAAAAUGC+U+G AC GA +AA U++AU AA A:+A 18454 UAGAAAU--UGAUaaauuauUAAAAAUGCAUAG----ACAGACAAA-UAAAUAAAUAAAA 18506 _________________>>>-------->>>>---->>>>: 54 AaAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 A+AUU CAU G +U :U UUU G U C+A+C AU:::U 18507 AUAUU-CAUUG-UU---UUGUUUUGAUUCAAACAUAUUUAU 18542 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #849,emb|8254689| 32303 bp 2 contigs ----isReversed: 1 ----hitSequence: UAAAAAUGAUAAUGAACUUAAGUUUUAUACAAAGAAAGUACUUUUUUAUAAAAAAAAAUAUUAACUUUUAAAUUAUUUUUUUAUUUUAGUCUGAUUCAU ----ssRNAplot: ((((...................((((.........................(((....................)))........))))....)))). ----hitGC: 0.131313 ----pairStats: 11,0,1,2 hit 16 : 12567 12469 (rev) 15.06 bits <<<<------------.------<<<<--------------....--------<<<____ 1 gucaAAUGAUGAUCAA.aAAUGCAUAGUUCAACUGAuuAaa....UuUAUGAAGAUuAAa 55 : :AAAUGAU AU AA + A+G : :U CAA+ GA + A UUUAU AA:A:+AA+ 19737 UAAAAAUGAUAAUGAAcUUAAGUUUUAUACAAA-GAAAGUAcuuuUUUAUAAAAAAAAAU 19795 ___.____________>>>-------->>>>---->>>>: 56 AUU.CCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 AUU +C U +AA UUA:U:UUU U : : CUGAU: :U 19796 AUUaACUUUUAAAUUAUUUUUUUAUUUUAGUCUGAUUCAU 19835 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #876,emb|8254691| 686164 bp 4 contigs ----isReversed: 1 ----hitSequence: UAGAAAUUAUGAUAUUCCUAUAAAAAUAUACUACCCAUUAGAAGUAGAUUCAAAUGAUUAAAUAUACUCAUUAUUAAAGUUCUAUGAAUAGAGUAUUUAGCUGCCUUCUUUGUU ----ssRNAplot: ((((........................................((((.......................(((..................)))........))))..)))). ----hitGC: 0.236842 ----pairStats: 11,0,2,4 hit 17 : 179962 179849 (rev) 15.43 bits <<<<---------......................---.------<<<<----------- 1 gucaAAUGAUGAU......................CAA.aAAUGCAUAGUUCAACUGAuu 37 : :AAAU AUGAU CA A A+G ::UUCAA+UGAUU 506203 UAGAAAUUAUGAUauuccuauaaaaauauacuaccCAUuAGAAG-UAGAUUCAAAUGAUU 506261 -------.----<<<___________________>>>-------->>>>---->>>>: 38 AaaUuUA.UGAAGAUuAAaAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 AAAU+UA U A+ AUUAAA UU C GAAU+ AGU UUU GCU :: CU U: :U 506262 AAAUAUAcUCAUUAUUAAAGUU-CUAUGAAUAGAGUAUUUAGCUGCCUUCU--UUGUU 506316 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #895,emb|8254697| 1227316 bp 10 contigs ----isReversed: 0 ----hitSequence: UUUUAAUCAUGAGAAACAGUGCAUAAUUUAGAUAAAAAUUUAAAAGAUGAGUUAUAAUUCAUGGUUUUAUCUUAGUCGCCUAUUUAUGAAGAAU ----ssRNAplot: ((((..................((((......................((...................))..........))))....)))). ----hitGC: 0.234043 ----pairStats: 11,1,1,2 hit 18 : 81284 81377 (fwd) 17.33 bits <<<<------------------<<<<----------------------<<.<________ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGA.UuAAaAUUC 59 :+ :AAU AUGA AA A UGCA A:UU A +U A +A U++A GA+GA UUA AAUU 81284 UUUUAAUCAUGAGAAACAGUGCAUAAUUUAGAUAAAAAUUUAAAAGAUGAgUUAUAAUU- 81342 ___________>>>--..------>>>>---->>>>: 60 CAUCGAAUUUAGUCUU..UCGCUCCUAUCUGAuggcU 94 CAU G +UUUA UCUU UCGC :U U UGA: +:U 81343 CAU-GGUUUUA-UCUUagUCGCCUAUUUAUGAAGAAU 81377 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #895,emb|8254697| 1227316 bp 10 contigs ----isReversed: 0 ----hitSequence: UUAAAUUGAUGAUCAAACUUGAAAAUUCAUCUGAAAAGAUGAUGAAUUUUUCAAAAUAUUUUGUUUAUUUCUGUUGAA ----ssRNAplot: ((((.................((((..................(((.........)))........))))...)))). ----hitGC: 0.205128 ----pairStats: 11,0,1,3 hit 19 : 253047 253124 (fwd) 19.86 bits <<<<------------------<<<<----------------------<<<_________ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAUUCC 60 :U:AA UGAUGAUCAAA +UG A A:UUCA CUGA +A AUGA+ A:U UU C 253047 UUAAAUUGAUGAUCAAACUUG-AAAAUUCAUCUGAAAAG----AUGAUGAAUUU--UU-C 253098 __________>>>-------->>>>---->>>>: 61 AUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 A A :U UUU G U :U UCUG U:G: 253099 A----AA---AUAUUUUGUUUAUUUCUG-UUGAA 253124 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1331,emb|8255325| 1115 bp 1 contigs ----isReversed: 0 ----hitSequence: UAGAAAUUAUGAUAUUCCUAUAAAAAUAUACUACCCAUUAGAAGUAGAUUCAAAUGAUUAAAUAUACUCAUUAUUAAAGUUCUAUGAAUAGAGUAUUUAGCUGCCUUCUUUGUU ----ssRNAplot: ((((........................................((((.......................(((..................)))........))))..)))). ----hitGC: 0.236842 ----pairStats: 11,0,2,4 hit 20 : 857 970 (fwd) 15.43 bits <<<<---------......................---.------<<<<----------- 1 gucaAAUGAUGAU......................CAA.aAAUGCAUAGUUCAACUGAuu 37 : :AAAU AUGAU CA A A+G ::UUCAA+UGAUU 857 UAGAAAUUAUGAUauuccuauaaaaauauacuaccCAUuAGAAG-UAGAUUCAAAUGAUU 915 -------.----<<<___________________>>>-------->>>>---->>>>: 38 AaaUuUA.UGAAGAUuAAaAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 AAAU+UA U A+ AUUAAA UU C GAAU+ AGU UUU GCU :: CU U: :U 916 AAAUAUAcUCAUUAUUAAAGUU-CUAUGAAUAGAGUAUUUAGCUGCCUUCU--UUGUU 970 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1346,emb|8254527| 520468 bp 1 contigs ----isReversed: 0 ----hitSequence: UUUUUAAGAUGAAUACUACAUCUAUUUUAACUGUUUAAUUUAUUAAGAUUAAUUAUUUAUAAAAUUUAAUCUAUUGCACUUAAAAAAU ----ssRNAplot: ((((..................(((.....................(((...................)))........))).)))). ----hitGC: 0.136364 ----pairStats: 11,1,0,1 hit 21 : 487640 487727 (fwd) 15.09 bits <<<<------------------<<<<----------------------<<<____.____ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAa.AUUC 59 :+:: A GAUGA +A +A + C UA:UU AACUG UUAA UUUAU AAGA:UAA+ AUU 487640 UUUUUAAGAUGAAUACUACAUC-UAUUUUAACUGUUUAA-UUUAUUAAGAUUAAUuAUU- 487696 ___________>>>-------->>>>---->>>>: 60 CAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 AU AAUUUA:UCU U GC C:UA A::+:U 487697 UAUAAAAUUUAAUCUAUUGCACUUA----AAAAAU 487727 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1414,emb|8254544| 102732 bp 1 contigs ----isReversed: 1 ----hitSequence: UUUAAAUGAUAUUAAUUUUUUAAUUGAGCAAAAUUAAAUGUUUUAUUCAAAUUAAAAUUGAGAUUAUAAUUUUUUUCUCACAUCAUAUAUUU ----ssRNAplot: ((((...............((((..........................(((................)))........))))....)))). ----hitGC: 0.130435 ----pairStats: 11,0,0,5 hit 22 : 75462 75371 (rev) 20.61 bits <<<<------------------<<<<--------------....--------<<<_____ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaa....UuUAUGAAGAUuAAaA 56 :+:AAAUGAU AU+AA +U U+:UU A C A U AA UUUAU A:A:UAAAA 27271 UUUAAAUGAU-AUUAA--UUUUUUAAUUGAGCAAAAUUAAauguUUUAUUCAAAUUAAAA 27327 ______________>>>-------->>>>---->>>>: 57 UUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 UU A GA+U+UA:U:UUU CUC:+A C AU:+:U 27328 UU-GA--GAUUAUAAUUUUUUUCUCACAUCAUAUAUUU 27362 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1479,emb|8254563| 396064 bp 1 contigs ----isReversed: 0 ----hitSequence: UUAAGAUCAACAGCAACAAAUGCCUAUUUAAAAUUAUUAAAUAAAUGAUGAUUUAUUUUACUGAUUAAAAUUAAUUUUUAGCUUAAAGCGAUGCUU ----ssRNAplot: ((((...................((((......................(((.....................)))........))))...)))). ----hitGC: 0.208333 ----pairStats: 11,0,1,4 hit 23 : 260486 260581 (fwd) 16.56 bits <<<<------------.------<<<<----------------------<<<________ 1 gucaAAUGAUGAUCAA.aAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAUUC 59 : A AU A A CAA AAAUGC:U+:UU AA+U AUUAAAU++AUGA+ A:U A+ UU+ 260486 UUAAGAUCAACAGCAAcAAAUGCCUAUUUAAAAUUAUUAAAUAAAUGAUGAUUUAUUUUA 260545 _..__________>>>-------->>>>---->>>>: 60 C..AUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 C AU AA UUA:U UUU GCU :+A:C GAU :U 260546 CugAUUAAAAUUAAUUUUUAGCUUAAAGC-GAUGCUU 260581 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1575,emb|8254582| 1075194 bp 7 contigs ----isReversed: 1 ----hitSequence: UAAUUUGAUAAUUUUCAUAAGCAUAUUUUAAAUUAUAAAAAUGAACAUAUUUUUAAAUUAAUUUAGUUAUUCGAACCAAACUGGCCUAU ----ssRNAplot: ((((..................((((...................(((.................)))........))))....)))). ----hitGC: 0.179775 ----pairStats: 11,0,1,6 hit 24 : 955384 955296 (rev) 20.75 bits <<<<---------...---------<<<<----------------------<<<______ 1 gucaAAUGAUGAU...CAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAU 57 ::: UGAU AU CA A+GC+U+:UU AA+U AU+AAA AUGAA AU A + U 119811 UAAUU-UGAUAAUuuuCAU--AAGCAUAUUUUAAAUUAUAAAA---AUGAACAU-AUUUU 119863 _____________>>>-------->>>>---->>>>: 58 UCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 U A +AAUUUAGU UUCG C:+A+CUG :::U 119864 U-AAAUUAAUUUAGUUAUUCGAACCAAACUGGCCUAU 119899 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1588,emb|8254586| 100846 bp 2 contigs ----isReversed: 0 ----hitSequence: AUGAUAUUAUGAUUUGUGAUAUUUCAAAUGACUAUUAAAUUAUUUAUGAACAUUUUUUAGUUCUACAUCUUAAUUUUUUGAUUAUAUUUGAUUUUA ----ssRNAplot: ((((..............((((............................(((...................)))........))))....)))). ----hitGC: 0.15625 ----pairStats: 11,0,1,2 hit 25 : 85080 85175 (fwd) 15.51 bits <<<<---------.---------<<<<--------------......--------<<<__ 1 gucaAAUGAUGAU.CAAaAAUGCAUAGUUCAACUGAuuAaa......UuUAUGAAGAUuA 53 +:A AU AUGAU + AUA:UUCAA+UGA UA UUUAUGAA A:U 85080 AUGAUAUUAUGAUuUGU-----GAUAUUUCAAAUGACUAUUaaauuaUUUAUGAACAUUU 85134 ___..___________.___>>>-------->>>>---->>>>: 54 AaA..UUCCAUCGAAU.UUAGUCUUUCGCUCCUAUCUGAuggcU 94 + UU C C AU UUA:U UUU G U :UAU UGAU:+ 85135 UUUagUU-CUAC--AUcUUAAUUUUUUGAUUAUAUUUGAUUUUA 85175 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1625,emb|8254592| 404784 bp 2 contigs ----isReversed: 0 ----hitSequence: AAUAAUUUAUGAUAAGAAGUUCUUAUCAAAUAUGGAAUUUUUGAUGAAUUAUACAAAAAAUUAAUUUAUCUAUUUUAGUUUUUGUCUCUCUCUGAUUUAU ----ssRNAplot: ((((...............................(((...................(((.................)))........)))....)))). ----hitGC: 0.18 ----pairStats: 11,1,0,5 hit 26 : 237009 237108 (fwd) 15.96 bits <<<<---------.............---------<<<<--------------------- 1 gucaAAUGAUGAU.............CAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGA 47 : AA U AUGAU CAAA AUG A +:UU +UGA U A A A 237009 AAUAAUUUAUGAUaagaaguucuuauCAAAUAUGGA-AUUUUUGAUGAAUUAU---ACAA 237064 -<<<___________________>>>-------->>>>---->>>>: 48 AGAUuAAaAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 A:A:U AA UU AUC+A+UUUA:U:UUU CUC:+ UCUGAU : U 237065 AAAAUUAAUUU--AUCUAUUUUAGUUUUUGUCUCUC-UCUGAUUUAU 237108 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1629,emb|8254593| 533928 bp 3 contigs ----isReversed: 0 ----hitSequence: UUUAAUUUAUGAUAGAUACAUUAUUAAUAAAUCUUUCAAAUAGUAUAACUAUAAUAAUUCCAUAAAUUGUAAUUUUUUGAUAAUUAUCUGAUUUUU ----ssRNAplot: ((((..........................((((..................(((................))).........))))....)))). ----hitGC: 0.135417 ----pairStats: 11,0,0,5 hit 27 : 53955 54050 (fwd) 16.71 bits <<<<---------........---------<<<<----------------------<<<_ 1 gucaAAUGAUGAU........CAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUu 52 :+ AA U AUGAU +A +AAU AU::UUCAA+U A UA A A A+:A:+ 53955 UUUAAUUUAUGAUagauacauUAUUAAUAAAUCUUUCAAAU-AGUAUA---ACUAUAAUA 54010 __________________>>>--------.>>>>---->>>>: 53 AAaAUUCCAUCGAAUUUAGUCUUUCGCUC.CUAUCUGAuggcU 94 A UUCCAU A+U UA:U:UUU G U ::AUCUGAU +:U 54011 A---UUCCAUAAAUUGUAAUUUUUUGAUAaUUAUCUGAUUUUU 54050 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1629,emb|8254593| 533928 bp 3 contigs ----isReversed: 0 ----hitSequence: UUUAAAGAUGAAAAAAUUGCAUAUUUUCUACUAAAAAAUUAGAAUAUUUAAUAAAUAUUGCAUUUAAUGAUUUGUUUUUAGCUAGUAAAACUUAUCAUU ----ssRNAplot: ((((................((((.........................(((.....................)))..........))))....)))). ----hitGC: 0.161616 ----pairStats: 11,0,1,4 hit 28 : 287017 287115 (fwd) 15.51 bits <<<<------------------<<<<.--------------...--------<<<_____ 1 gucaAAUGAUGAUCAAaAAUGCAUAG.UUCAACUGAuuAaa...UuUAUGAAGAUuAAaA 56 :+ AAA GAUGA AAAA+UGC+U+: UUC ACU A +AA +UAU +:AU+AA+A 287017 UUUAAA-GAUGAA-AAAAUUGCAUAUuUUCUACUAAAAAAUuagAAUAUU-UAAUAAAUA 287073 ___________..___>>>--------..>>>>---->>>>: 57 UUCCAUCGAAU..UUAGUCUUUCGCUC..CUAUCUGAuggcU 94 UU CAU +AAU UU GU:UUU GCU :+A+CU AU +:U 287074 UUGCAUUUAAUgaUUUGUUUUUAGCUAguAAAACUUAUCAUU 287115 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1629,emb|8254593| 533928 bp 3 contigs ----isReversed: 0 ----hitSequence: GUAGAAUGAUCAUUUUAUAAAAUCAUAUCAUGAUUAUUUCUAUAAACAAAAACUCCUUCAAAUUUUUUCAUUUACUCUGUGUGAAGAUU ----ssRNAplot: ((((....................(((...................(((.................)))........)))....)))). ----hitGC: 0.224719 ----pairStats: 11,1,2,3 hit 29 : 308300 308388 (fwd) 15.58 bits <<<<---------..---------<<<<----------------------<<<_______ 1 gucaAAUGAUGAU..CAAaAAUGCAUAGUUCAACUGAuuAaaUuUAUGAAGAUuAAaAUU 58 + AAUGAU AU +A AAA+ CA:A UC +UGAUUA U UAU AA A:+AA U 308300 GUAGAAUGAUCAUuuUAUAAAAUCAUA--UC--AUGAUUAUUUCUAUAAACAAAAA--CU 308353 ____________>>>-------->>>>---->>>>: 59 CCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 CC UC AAUUU :U UU CUC U:U UGA + U 308354 CCUUCAAAUUUUUUCAUUUACUC-UGUGUGAAGAUU 308388 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1668,emb|8254748| 306323 bp 5 contigs ----isReversed: 1 ----hitSequence: AUUAAAUGAGUAUCAAAUAAUUAAAAAUGAAAGAUAAAUUUUAUUAAAACUAAUUUAACUUUUCCCCCCUAUUUUAGAU ----ssRNAplot: ((((............((((..................(((................)))........))))..)))). ----hitGC: 0.177215 ----pairStats: 11,0,1,4 hit 30 : 19997 19919 (rev) 15.24 bits <<<<------------------<<<<----.------------------<<<________ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCA.ACUGAuuAaaUuUAUGAAGAUuAAaAUUC 59 U:AAAUGA AUCAA AUA:UU A A+UGA + AU AA :UA UU+ 286327 AUUAAAUGAGUAUCAA------AUAAUUAAaAAUGAAAG-----AUAAAUUUUA---UUA 286372 ___________>>>-------->>>>---->>>>: 60 CAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 A C+AAUUUA: UUUC C C:UAU U U:G U 286373 AAACUAAUUUAACUUUUCCCCCCUAUUU--UAGAU 286405 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1737,emb|8254764| 375231 bp 3 contigs ----isReversed: 1 ----hitSequence: UUUAUUUUUGAUUAUCAUAUUUUAAAUUAUAAAAACUUAUUUAAAACAAUAAACUUCUUUUAAUUUAUUUCUUUUAUUUUUAUUUGAUUUUU ----ssRNAplot: ((((............((((.........................(.((..................)).)........))))....)))). ----hitGC: 0.0869565 ----pairStats: 11,0,0,5 hit 31 : 37307 37216 (rev) 15.12 bits <<<<------------------<<<<--------------...--------<.<<_____ 1 gucaAAUGAUGAUCAAaAAUGCAUAGUUCAACUGAuuAaa...UuUAUGAAG.AUuAAaA 56 :+ A U UGAU+A CAUA:UU AA+U AU+AAA U+U U AA: A:UAAA 337925 UUUAU-UUUUGAUUAU-----CAUAUUUUAAAUUAUAAAAacuUAUUUAAAAcAAUAAAC 337978 ______________>>.>-------->>>>---->>>>: 57 UUCCAUCGAAUUUAGU.CUUUCGCUCCUAUCUGAuggcU 94 UU C U +AAUUUA:U :UUU U :UAU UGAU +:U 337979 UU-CUUUUAAUUUAUUuCUUUUAUUUUUAUUUGAUUUUU 338016 ----endhit ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----sequence: #1800,emb|8254779| 131984 bp 1 contigs ----isReversed: 0 ----hitSequence: UUGGAAUGAUGAUUGAUCCAUUUGGCAACAAUUAAACUGAGUUAAAUUAAAGUAAUUCAUUUAUUUAUUAAUUUGUCUUAUAUAUGAAAAAU ----ssRNAplot: ((((.......................((((...................(((...............)))........))))....)))). ----hitGC: 0.206522 ----pairStats: 11,0,0,7 hit 32 : 100341 100432 (fwd) 15.04 bits <<<<---------.....-------.--.<<<<----------------------<<<__ 1 gucaAAUGAUGAU.....CAAaAAU.GC.AUAGUUCAACUGAuuAaaUuUAUGAAGAUuA 53 :+ AAUGAUGAU CA +U GC A:A:UU AACUGA U AA AU AA:: +A 100341 UUGGAAUGAUGAUugaucCAU--UUgGCaACAAUUAAACUGAGUUAA---AUUAAAGUAA 100395 _________________>>>-------->>>>---->>>>: 54 AaAUUCCAUCGAAUUUAGUCUUUCGCUCCUAUCUGAuggcU 94 UU CAU +A+UU ::UUU CU :U:U UGA +:U 100396 ---UU-CAUUUAUUUAUUAAUUUGUCUUAUAUAUGAAAAAU 100432 ----endhit Found 33 hits. done 2.08166e+08 nucs (frac lets thru so far=0.00263115588, 2d-fracLetsThru=0.00134223). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.0102317087, 2d-fracLetsThru=0.00525488). Filter report: done 2.1299e+06 nucs (frac lets thru so far=0.257157036, 2d-fracLetsThru=0.255426). FULL: done 2.08166e+08 nucs (frac lets thru so far=0.00263115588, 2d-fracLetsThru=0.00134223). CPU time: 5504.62u 1.80s 01:31:46.42 Elapsed: 01:31:58 DONEdoneDONEdone