Params: release/cmzasha --no-stderr --filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00373.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00373_RNaseP_arch/RF00373_at40.filterspec Build: release Host: node012 pid: 15843 ---time: Wed Jul 13 10:48:51 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00373_Bordetella_expanded.hmm 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00373_Bordetella_expanded.hmm 1/remember-nuc,57,l-ACGU-_,56,l-ACGU-_,55,l-ACGU-_,100,r-ACU-G-_,99,r-AU-C-G-_,113,l-ACU-G-_,112,r-ACU-G_,111,r-ACU-G_,189,l-ACGU-_,188,l-ACGU-_,187,r-ACU-G-_,223,r-ACGU-_,222,r-ACGU-_,221,l-ACGU-_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00373_Bordetella_expanded.hmm 1/remember-nuc,57,l-ACGU-_,56,l-ACGU-_,55,l-ACGU-_,54,l-ACGU-_,53,l-ACGU-_,100,r-ACU-G-_,99,r-ACU-G-_,98,r-AGU-C-_,97,r-CGU-A_,113,l-ACU-G-_,112,r-ACU-G-_,110,r-A_-GU-C,189,l-AGU-C-_,188,r-ACGU-_,187,r-ACU-G-_,178,r-ACGU-_,223,r-ACGU-_,222,r-ACGU-_,221,l-ACGU-_,217,l-AGU-C-_ ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00373.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00373.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node005 pid: 14655 ;Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00373.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node005 pid: 14655 ----2struct-info: only-hmm Exploded HMM has 2648 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00373.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00373.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node005 pid: 14655 ;Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00373.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node005 pid: 14655 ----2struct-info: 1/remember-nuc,57,l-ACGU-_/remember-nuc,56,l-ACGU-_/remember-nuc,55,l-ACGU-_/remember-nuc,100,r-ACU-G-_/remember-nuc,99,r-AU-C-G-_/remember-nuc,113,l-ACU-G-_/remember-nuc,112,r-ACU-G_/remember-nuc,111,r-ACU-G_/remember-nuc,189,l-ACGU-_/remember-nuc,188,l-ACGU-_/remember-nuc,187,r-ACU-G-_/remember-nuc,223,r-ACGU-_/remember-nuc,222,r-ACGU-_/remember-nuc,221,l-ACGU-_ Exploded HMM has 6585 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00373.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00373.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node005 pid: 14655 ;Params: release/cmzasha --create-rigorous-filter 500 40 /home/kasiaw/Rfam_7.0/CM/RF00373.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node005 pid: 14655 ----2struct-info: 1/remember-nuc,57,l-ACGU-_/remember-nuc,56,l-ACGU-_/remember-nuc,55,l-ACGU-_/remember-nuc,54,l-ACGU-_/remember-nuc,53,l-ACGU-_/remember-nuc,100,r-ACU-G-_/remember-nuc,99,r-ACU-G-_/remember-nuc,98,r-AGU-C-_/remember-nuc,97,r-CGU-A_/remember-nuc,113,l-ACU-G-_/remember-nuc,112,r-ACU-G-_/remember-nuc,110,r-A_-GU-C/remember-nuc,189,l-AGU-C-_/remember-nuc,188,r-ACGU-_/remember-nuc,187,r-ACU-G-_/remember-nuc,178,r-ACGU-_/remember-nuc,223,r-ACGU-_/remember-nuc,222,r-ACGU-_/remember-nuc,221,l-ACGU-_/remember-nuc,217,l-AGU-C-_ ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00373.cm (global) ----CM-scanning-logic: Infernal-0.55 Found 0 hits. done 2.08166e+08 nucs (frac lets thru so far=2.4019257e-06, 2d-fracLetsThru=1.20908e-06). Filter report: done 2.08166e+08 nucs (frac lets thru so far=9.77583759e-06, 2d-fracLetsThru=5.00526e-06). Filter report: done 2035 nucs (frac lets thru so far=0.256511057, 2d-fracLetsThru=0.262777). Filter report: done 522 nucs (frac lets thru so far=0.957854406, 2d-fracLetsThru=0.919266). FULL: done 2.08166e+08 nucs (frac lets thru so far=2.4019257e-06, 2d-fracLetsThru=1.20908e-06). CPU time: 17441.33u 0.96s 04:50:42.29 Elapsed: 04:50:42 DONEdoneDONEdone