Params: release/cmzasha --no-stderr --filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00374_Gammaretro_CES/RF00374_at10.filterspec Build: release Host: node001 pid: 13307 ---time: Mon Jul 4 21:17:52 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00374_Bordetella_expanded.hmm 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00374_Bordetella_expanded.hmm 1/remember-nuc,20,l-ACGU-_,19,r-CGU-A-_,57,l-ACG-U-_,56,r-ACGU-_,73,r-ACG-U-_,72,r-ACGU-_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00374_Bordetella_expanded.hmm 1/sub,15,54/sub,55,52 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00374_Bordetella_expanded.hmm 1/sub,15,54/sub,56,45/sub,70,83 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00374.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ;Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ----2struct-info: only-hmm Exploded HMM has 826 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00374.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ;Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ----2struct-info: 1/remember-nuc,20,l-ACGU-_/remember-nuc,19,r-CGU-A-_/remember-nuc,57,l-ACG-U-_/remember-nuc,56,r-ACGU-_/remember-nuc,73,r-ACG-U-_/remember-nuc,72,r-ACGU-_ ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00374.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ;Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ----2struct-info: 1/sub,15,54/sub,55,52 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00374.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ;Params: release/cmzasha --create-rigorous-filter 150 10 /home/kasiaw/Rfam_7.0/CM/RF00374.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node001 pid: 22846 ----2struct-info: 1/sub,15,54/sub,56,45/sub,70,83 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00374.cm (global) ----CM-scanning-logic: Infernal-0.55 Found 0 hits. done 2.08166e+08 nucs (frac lets thru so far=5.79344479e-06, 2d-fracLetsThru=2.93437e-06). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.000843796498, 2d-fracLetsThru=0.000433895). Filter report: done 175650 nucs (frac lets thru so far=0.33655565, 2d-fracLetsThru=0.33658). Filter report: done 59116 nucs (frac lets thru so far=0.0948981663, 2d-fracLetsThru=0.0939918). Filter report: done 5610 nucs (frac lets thru so far=0.214973262, 2d-fracLetsThru=0.213772). FULL: done 2.08166e+08 nucs (frac lets thru so far=5.79344479e-06, 2d-fracLetsThru=2.93437e-06). CPU time: 6703.00u 1.26s 01:51:44.26 Elapsed: 01:52:00 DONEdoneDONEdone