Params: release/cmzasha --no-stderr --filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta 1 specfile /home/kasiaw/results/Tetrahymena_thermophila.fasta/RF00504_gcvT/RF00504_at20.filterspec Build: release Host: node004 pid: 19080 ---time: Tue Jul 5 02:38:37 2005 ----fastaFile: /home/kasiaw/Tetrahymena_thermophila/Tetrahymena_thermophila.fasta ----specfile: hmm /home/kasiaw/Rfam_7.0_filters/RF00504_Bordetella_expanded.hmm 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00504_Bordetella_expanded.hmm 1/remember-nuc,37,r-AU-C-G-_,69,r-AGU-C_,68,l-AGU-C_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00504_Bordetella_expanded.hmm 1/remember-nuc,37,r-AU-C-G-_,36,r-A_-CU-G,69,r-AG-CU-_,68,r-AG-CU-_,59,l-AGU-C_ 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00504_Bordetella_expanded.hmm 1/remember-nuc,37,r-AU-C-G-_,36,r-ACU-G_,35,r-ACU-G_,34,l-CU_-AG,69,r-AG-CU-_,68,r-AG-CU-_,59,l-AGU-C_,58,l-ACU_-G 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00504_Bordetella_expanded.hmm 1/remember-nuc,37,r-AU-C-G-_,36,l-AU-C-G-_,35,r-A_-CU-G,34,l-CU_-AG,69,r-AG-CU-_,68,r-AG-CU-_,59,l-AGU-C-_,58,l-ACU_-G,55,r-ACG_-U 2struct-str /home/kasiaw/Rfam_7.0_filters/RF00504_Bordetella_expanded.hmm 1/sub,50,250 ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00504.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ;Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ----2struct-info: only-hmm Exploded HMM has 640 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00504.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ;Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ----2struct-info: 1/remember-nuc,37,r-AU-C-G-_/remember-nuc,69,r-AGU-C_/remember-nuc,68,l-AGU-C_ Exploded HMM has 1610 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00504.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ;Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ----2struct-info: 1/remember-nuc,37,r-AU-C-G-_/remember-nuc,36,r-A_-CU-G/remember-nuc,69,r-AG-CU-_/remember-nuc,68,r-AG-CU-_/remember-nuc,59,l-AGU-C_ Exploded HMM has 3392 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00504.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ;Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ----2struct-info: 1/remember-nuc,37,r-AU-C-G-_/remember-nuc,36,r-ACU-G_/remember-nuc,35,r-ACU-G_/remember-nuc,34,l-CU_-AG/remember-nuc,69,r-AG-CU-_/remember-nuc,68,r-AG-CU-_/remember-nuc,59,l-AGU-C_/remember-nuc,58,l-ACU_-G Exploded HMM has 9656 states ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00504.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ;Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ----2struct-info: 1/remember-nuc,37,r-AU-C-G-_/remember-nuc,36,l-AU-C-G-_/remember-nuc,35,r-A_-CU-G/remember-nuc,34,l-CU_-AG/remember-nuc,69,r-AG-CU-_/remember-nuc,68,r-AG-CU-_/remember-nuc,59,l-AGU-C-_/remember-nuc,58,l-ACU_-G/remember-nuc,55,r-ACG_-U ----hmm-from-cmFileName: /home/kasiaw/Rfam_7.0/CM/RF00504.cm ----hmm-build-info: ;(default construction of HMM) Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ;Params: release/cmzasha --create-rigorous-filter 250 20 /home/kasiaw/Rfam_7.0/CM/RF00504.cm /home/kasiaw/Rfam_7.0_filters data/default.filtercreationspec Build: release Host: node011 pid: 16695 ----2struct-info: 1/sub,50,250 ----cmFile: /home/kasiaw/Rfam_7.0/CM/RF00504.cm (global) ----CM-scanning-logic: Infernal-0.55 Found 0 hits. done 2.08166e+08 nucs (frac lets thru so far=8.3111433e-05, 2d-fracLetsThru=4.25668e-05). Filter report: done 2.08166e+08 nucs (frac lets thru so far=0.0389593453, 2d-fracLetsThru=0.021651). Filter report: done 8.11002e+06 nucs (frac lets thru so far=0.453223869, 2d-fracLetsThru=0.440204). Filter report: done 3.67566e+06 nucs (frac lets thru so far=0.337417865, 2d-fracLetsThru=0.328208). Filter report: done 1.24023e+06 nucs (frac lets thru so far=0.403795419, 2d-fracLetsThru=0.400964). Filter report: done 500800 nucs (frac lets thru so far=0.451940895, 2d-fracLetsThru=0.449293). Filter report: done 226332 nucs (frac lets thru so far=0.0764408038, 2d-fracLetsThru=0.0755361). FULL: done 2.08166e+08 nucs (frac lets thru so far=8.3111433e-05, 2d-fracLetsThru=4.25668e-05). CPU time: 7284.63u 2.03s 02:01:26.65 Elapsed: 02:01:50 DONEdoneDONEdone