Ph.D. students
Addie Woicik (2020 - present) MIT (BS, MS). Topic: time series analysis for developmental biology
Zixuan Zucks Liu (2021 - present, co-advised with Prof. Linda Shapiro) USTC (BS), Stanford (MS). Topic: biomedical image analysis
Hanwen Xu (2022 - present) Tsinghua (BS, MS).
Tong Chen (2022 - present) Tsinghua Yao Class.
Guang Yang (in coming 2023 fall) Tsinghua Yao Class.
Previous members
Yilun Sheng Rotating PhD student. Now at Sara Mostafavi's group.
Gian Marco Visani Rotating PhD student. Now at Armita Nourmohammad's group (UW Physics).
Undergraduate researchers
We host undergraduate and master independent researchers every summer. Priority is given to undergraduate students who are interested in computational medicine, but do not have relevant research opportunities in their departments/schools. Biomedical knowledge is not required. Students are expected to have good machine learning background and lead their own projects.
Below are students who have worked with me for at least 4 months.
- Summer 2023
- Tangqi Fang
Tsinghua University Yao Class (BS). Topic: AI4Science.
- Yifeng Liu
Tsinghua University Yao Class BS). Topic: biomedical NLP.
- Haocheng Xi
Tsinghua University Yao Class (BS). Topic: Large langauge model.
- Runchu Tian
Tsinghua University (BS). Topic: biomedical NLP.
- Yongkang Li
Peking University (BS). Topic: Large langauge model.
- Minsi Lu
Peking University (BS). Topic: Hi-C analysis.
- Fangkai Hu
Peking University (BS). Topic: Hi-C analysis.
- Zefan Cai
Peking University (MS). Topic: Large langauge model.
- Summer 2022
- Zichun Yu
Tsinghua University (BS) → CMU (PhD). Topic: biomedical NLP.
- Jianzhu Yao
Tsinghua University (BS) → Princeton (PhD). Topic: biomedical NLP.
- Jiacheng Lin
Tsinghua University (BS/MS) → UIUC (PhD). Topic: drug discovery.
- Chuwei Xia
Peking University (BS) → University of Minnesota (PhD). Topic: Hi-C analysis.
- Yuan Zhou
Tsinghua University (BS) → Purdue (PhD). Topic: biomedical NLP.
- Kefei Duan
Peking University (BS) → WUSTL (PhD). Topic: biomedical NLP.
- Summer 2021
- Ding Bai
Tsinghua University Yao Class (BS) → Mohamed bin Zayed University of Artificial Intelligence (PhD). Topic: single cell spatial transcriptomics.
- Tong Chen
Tsinghua University Yao Class (BS) → UW CSE (PhD). Topic: cancer genomics, first author paper under review.
- Fenglin Liu
Peking University (MS) → Oxford (PhD). Topic: bionlp, first author paper accepted by NeurIPS 2022. Frist author paper under review in KDD.
- Yuhao Tan
Peking University, Biology (BS) → University of Pennsylvania (PhD). Topic: single cell genomics.
- Hanwen Xu
Tsinghua University (MS) → UW CSE (PhD). Topic: scientific literature mining, first author paper in RECOMB, 2022.
- Muqun Wang
University of Science and Technology of China (BS) → UIUC CS MS. Topic: bionlp, first author pape in ACL.
- Yingheng Wang
Tsinghua University (MS) → Cornell (PhD). Topic: drug discovery.
- Ziyan Wang
University of Michigan (BS) → Gatech (PhD). Topic: single cell spatial transcriptomics.
- Zhirui Wang
Peking University (BS) → CMU MS. Topic: bionlp, first author paper under review in ACL ARR.
- Jiayou Zhang
Tsinghua University (BS) → Mohamed bin Zayed University of Artificial Intelligence (PhD). Topic: bionlp, first author paper under review in ACL ARR.
- Summer 2020
- Bowen Gao
Caltech (MS) → UToronto (PhD), co-first author paper in submission.
- Yuepeng Jiang
Zhejiang University (BS) → City University of Hong Kong (PhD), first author paper accepted by RECOMB, 2021.
- Zhuoyan Li
Wuhan University (BS) → Purdue (PhD), first author paper in ACM BCB, 2021.
- Xinming Tu
Peking University (BS) → University of Washington (PhD).
- Ruiyi Zhang
Peking University (BS) → UCSD (PhD), first author paper in Bioinformatics.